Wall clock time and date at job start Mon Mar 30 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38679 * 120.41464 * 2 1 4 4 C 1.38630 * 118.41967 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.15814 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.61522 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46649 * 244.99281 * 6 5 4 8 8 O 1.42895 * 109.47045 * 4.99632 * 6 5 4 9 9 C 1.50695 * 109.47014 * 124.99738 * 6 5 4 10 10 H 1.08004 * 120.00546 * 0.27454 * 9 6 5 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47093 * 60.00328 * 13 11 9 15 15 H 1.48495 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47239 * 300.00048 * 13 11 9 17 17 N 1.31855 * 120.76466 * 0.24682 * 5 4 3 18 18 C 1.31881 * 121.72843 * 359.48610 * 17 5 4 19 19 H 1.08999 * 109.46958 * 90.00138 * 1 2 3 20 20 H 1.09005 * 109.46859 * 209.99957 * 1 2 3 21 21 H 1.08998 * 109.47105 * 329.99511 * 1 2 3 22 22 H 1.08001 * 120.79132 * 359.95705 * 3 2 1 23 23 H 1.08001 * 120.42089 * 179.97438 * 4 3 2 24 24 H 0.96696 * 114.00520 * 60.00051 * 8 6 5 25 25 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 26 26 H 1.07992 * 119.62264 * 180.26406 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 0.0005 5 6 4.2256 -0.0821 0.0005 6 6 5.7313 -0.1466 0.0005 7 1 6.0756 -0.5962 -0.9308 8 8 6.2646 1.1739 0.1179 9 6 6.1982 -0.9823 1.1644 10 1 5.4768 -1.4263 1.8343 11 6 7.5464 -1.1851 1.3704 12 7 8.4248 -0.6488 0.5516 13 14 8.1254 -2.2203 2.8136 14 1 7.5706 -3.5925 2.6925 15 1 9.6089 -2.2839 2.8135 16 1 7.6568 -1.6070 4.0823 17 7 3.5255 -1.1995 -0.0049 18 6 2.2067 -1.1916 -0.0004 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8899 0.5139 22 1 1.6889 2.1424 -0.0007 23 1 4.1735 2.0594 0.0001 24 1 5.9988 1.6352 0.9251 25 1 9.3732 -0.7912 0.6968 26 1 1.6673 -2.1271 -0.0007 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088136689.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:17 Heat of formation + Delta-G solvation = -47.868392 kcal Electronic energy + Delta-G solvation = -11606.518981 eV Core-core repulsion = 9455.883719 eV Total energy + Delta-G solvation = -2150.635262 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.12417 -37.68779 -34.42087 -34.29208 -32.53647 -29.88157 -27.37514 -24.84862 -24.08469 -22.05447 -19.18236 -17.80458 -17.30152 -16.68129 -15.86468 -15.73495 -15.45916 -14.66492 -14.53768 -13.87018 -13.58698 -13.27481 -13.15777 -12.86195 -12.79243 -12.40553 -12.05644 -11.44381 -10.81025 -10.65778 -10.60784 -9.96835 -9.49475 -8.15374 -6.39800 0.30367 0.51133 1.38808 1.41668 1.50108 2.38452 2.97859 3.08718 3.58150 4.01291 4.03604 4.10657 4.24033 4.37726 4.69438 4.85227 4.90464 4.99441 5.21624 5.29591 5.42834 5.54197 5.64948 5.95013 6.03050 6.66696 7.19699 7.31412 7.48645 8.88816 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.057143 B = 0.010146 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.883223 B = 2759.021970 C = 3075.553002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.154 4.154 3 C -0.077 4.077 4 C -0.179 4.179 5 C 0.093 3.907 6 C 0.272 3.728 7 H 0.034 0.966 8 O -0.566 6.566 9 C -0.562 4.562 10 H 0.049 0.951 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.964 3.036 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.267 1.267 17 N -0.508 5.508 18 C 0.077 3.923 19 H 0.082 0.918 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.166 0.834 23 H 0.143 0.857 24 H 0.361 0.639 25 H 0.264 0.736 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 3.016 0.852 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C -0.103 4.103 4 C -0.199 4.199 5 C -0.044 4.044 6 C 0.214 3.786 7 H 0.051 0.949 8 O -0.370 6.370 9 C -0.600 4.600 10 H 0.067 0.933 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.788 3.212 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.192 1.192 17 N -0.218 5.218 18 C -0.081 4.081 19 H 0.101 0.899 20 H 0.097 0.903 21 H 0.100 0.900 22 H 0.184 0.816 23 H 0.161 0.839 24 H 0.207 0.793 25 H 0.073 0.927 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.280 2.100 0.210 13.447 hybrid contribution 0.164 0.213 0.991 1.027 sum -13.116 2.313 1.201 13.372 Atomic orbital electron populations 1.20714 0.87214 1.04131 1.03420 1.21302 0.99429 0.93422 1.01459 1.21824 0.92845 0.99623 0.95997 1.22095 0.96274 0.98875 1.02634 1.22496 0.98384 0.89396 0.94098 1.17907 0.82922 0.81664 0.96105 0.94867 1.86526 1.76239 1.29435 1.44817 1.21623 0.92182 1.33291 1.12894 0.93252 1.25891 0.96768 0.95982 0.98976 1.70184 1.01797 1.43689 1.38013 0.85552 0.77106 0.79117 0.79426 1.19801 1.20323 1.19183 1.67378 1.09361 1.32374 1.12647 1.23196 0.89217 0.99258 0.96443 0.89903 0.90317 0.89951 0.81633 0.83890 0.79333 0.92699 0.81234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.04 71.24 0.72 -0.94 15 2 C -0.15 -4.26 5.90 -19.77 -0.12 -4.37 15 3 C -0.08 -2.22 9.86 22.47 0.22 -2.00 15 4 C -0.18 -6.69 9.24 22.36 0.21 -6.48 15 5 C 0.09 4.35 6.11 42.56 0.26 4.61 15 6 C 0.27 15.06 3.31 29.10 0.10 15.16 15 7 H 0.03 2.10 8.14 -2.39 -0.02 2.08 15 8 O -0.57 -29.81 11.61 -148.98 -1.73 -31.54 15 9 C -0.56 -32.99 8.56 25.60 0.22 -32.77 15 10 H 0.05 2.93 7.68 -2.91 -0.02 2.91 15 11 C 0.03 1.51 5.40 84.66 0.46 1.97 15 12 N -0.90 -54.95 12.84 21.45 0.28 -54.67 15 13 Si 0.96 45.18 29.54 68.60 2.03 47.21 15 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 17 N -0.51 -23.08 9.97 -183.89 -1.83 -24.91 15 18 C 0.08 2.63 10.86 84.67 0.92 3.55 15 19 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 20 H 0.08 1.16 8.09 -2.38 -0.02 1.14 15 21 H 0.08 1.12 8.10 -2.39 -0.02 1.10 15 22 H 0.17 3.33 8.06 -2.91 -0.02 3.30 15 23 H 0.14 4.97 6.73 -2.91 -0.02 4.95 15 24 H 0.36 16.48 8.29 -74.06 -0.61 15.87 15 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 15 26 H 0.17 4.65 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -70.98 234.17 2.29 -68.69 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.57 Total: 16.50 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 2.98 Total: -21.27 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.56 Total: -79.58 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.73 Total: -31.54 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.98 2.29 -68.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088136689.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.825 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds