Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48501 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 300.00153 * 3 2 1 6 6 H 1.48494 * 109.47398 * 59.99670 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38072 * 119.56873 * 124.72690 * 12 9 7 14 14 C 1.38844 * 119.32544 * 179.77425 * 13 12 9 15 15 C 1.38338 * 118.50679 * 0.49115 * 14 13 12 16 16 C 1.39105 * 119.09651 * 359.75251 * 15 14 13 17 17 N 1.39008 * 119.70315 * 180.02562 * 16 15 14 18 18 N 1.31942 * 119.57894 * 304.99937 * 12 9 7 19 19 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 20 20 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 21 21 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 22 22 H 1.07993 * 120.33940 * 359.97438 * 13 12 9 23 23 H 1.07998 * 120.74361 * 180.24257 * 14 13 12 24 24 H 1.07996 * 120.45502 * 179.77293 * 15 14 13 25 25 H 0.96998 * 119.99527 * 179.97438 * 17 16 15 26 26 H 0.97004 * 120.00106 * 359.97348 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.1540 -4.6065 0.9889 14 6 3.0558 -5.6622 0.9812 15 6 4.0119 -5.7064 -0.0177 16 6 4.0340 -4.7002 -0.9779 17 7 4.9890 -4.7325 -1.9875 18 7 3.1532 -3.7123 -0.9392 19 1 -0.4850 0.8401 -0.0004 20 1 0.9637 -2.5270 -2.0367 21 1 -0.1578 -3.4144 -1.1880 22 1 1.3984 -4.5403 1.7577 23 1 3.0143 -6.4293 1.7402 24 1 4.7312 -6.5112 -0.0516 25 1 5.0080 -4.0332 -2.6595 26 1 5.6363 -5.4542 -2.0200 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104513540.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = 12.934770 kcal Electronic energy + Delta-G solvation = -11671.631633 eV Core-core repulsion = 9555.925744 eV Total energy + Delta-G solvation = -2115.705888 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.97839 -36.80647 -35.04178 -33.55021 -32.50379 -29.91459 -27.95022 -25.07443 -23.48095 -22.15068 -18.60473 -18.01656 -17.69421 -16.76545 -16.48977 -16.00821 -15.49047 -15.12867 -14.75558 -14.25079 -13.82493 -13.24898 -12.88999 -12.74305 -12.53552 -11.99773 -11.55781 -11.13343 -10.54792 -10.44123 -10.17809 -8.91907 -8.60586 -7.95524 -6.13451 0.51795 0.72579 1.41867 1.43567 1.54900 2.48848 2.76729 3.15516 3.30665 3.87557 4.17130 4.41022 4.45827 4.52754 4.70809 5.01830 5.21612 5.42633 5.53239 5.79792 5.86807 6.18505 6.54579 6.65209 6.74416 7.08466 7.26221 7.55483 7.64309 9.08896 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045155 B = 0.011219 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.939970 B = 2495.185880 C = 2748.495799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.032 3.968 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.038 0.962 9 C 0.267 3.733 10 H 0.026 0.974 11 N -0.809 5.809 12 C 0.149 3.851 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.254 4.254 16 C 0.376 3.624 17 N -0.844 5.844 18 N -0.558 5.558 19 H 0.255 0.745 20 H 0.323 0.677 21 H 0.308 0.692 22 H 0.129 0.871 23 H 0.164 0.836 24 H 0.159 0.841 25 H 0.402 0.598 26 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -11.370 -0.673 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.171 4.171 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.157 3.843 10 H 0.044 0.956 11 N -0.335 5.335 12 C 0.009 3.991 13 C -0.277 4.277 14 C -0.059 4.059 15 C -0.279 4.279 16 C 0.138 3.862 17 N -0.389 5.389 18 N -0.278 5.278 19 H 0.064 0.936 20 H 0.135 0.865 21 H 0.118 0.882 22 H 0.147 0.853 23 H 0.182 0.818 24 H 0.176 0.824 25 H 0.231 0.769 26 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.587 -9.941 -1.009 12.546 hybrid contribution 0.985 -0.426 0.106 1.078 sum 8.571 -10.367 -0.903 13.482 Atomic orbital electron populations 1.70224 1.06828 1.26230 1.48595 1.25653 0.95493 1.01659 0.94263 0.85676 0.78697 0.80437 0.77643 1.20197 1.20654 1.20269 1.21025 0.91708 0.91031 1.52808 0.94365 1.17928 0.86995 0.89095 0.90329 0.95620 1.59113 1.27920 1.42254 1.04214 1.22592 0.92357 0.95290 0.88864 1.21912 1.04871 0.98359 1.02511 1.21622 0.91406 0.96202 0.96665 1.21571 1.05259 1.02454 0.98631 1.18925 0.88646 0.89757 0.88908 1.42079 1.34512 1.32374 1.29982 1.66956 1.06820 1.25062 1.28913 0.93566 0.86494 0.88167 0.85350 0.81826 0.82359 0.76922 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.29 12.77 21.45 0.27 -53.02 15 2 C 0.03 1.87 5.39 84.65 0.46 2.33 15 3 Si 0.95 45.95 29.54 68.60 2.03 47.98 15 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 15 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 7 C -0.53 -30.86 8.53 25.60 0.22 -30.64 15 8 H 0.04 2.32 7.68 -2.91 -0.02 2.29 15 9 C 0.27 14.14 2.93 43.42 0.13 14.27 15 10 H 0.03 1.47 7.86 -2.39 -0.02 1.45 15 11 N -0.81 -41.02 8.53 -174.94 -1.49 -42.51 15 12 C 0.15 6.77 5.67 42.50 0.24 7.01 15 13 C -0.25 -9.59 9.70 22.38 0.22 -9.37 15 14 C -0.03 -0.98 10.17 22.44 0.23 -0.75 15 15 C -0.25 -7.18 9.94 22.50 0.22 -6.96 15 16 C 0.38 12.81 7.75 133.05 1.03 13.84 15 17 N -0.84 -21.04 9.07 -55.44 -0.50 -21.54 15 18 N -0.56 -24.26 9.93 -181.33 -1.80 -26.06 15 19 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 20 H 0.32 16.39 8.92 -89.69 -0.80 15.59 15 21 H 0.31 13.89 9.06 -89.70 -0.81 13.08 15 22 H 0.13 4.59 7.94 -2.91 -0.02 4.57 15 23 H 0.16 3.36 8.06 -2.91 -0.02 3.33 15 24 H 0.16 3.11 8.06 -2.91 -0.02 3.08 15 25 H 0.40 10.09 8.95 -92.71 -0.83 9.26 15 26 H 0.42 6.99 8.82 -92.71 -0.82 6.17 15 Total: -1.00 -69.39 234.89 -0.77 -70.16 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -2.02 Total: 35.26 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 2.74 Total: -10.27 kcal Atomic # 7 Polarization: -139.61 SS G_CDS: -3.52 Total: -143.13 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -69.39 -0.77 -70.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104513540.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.097 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds