Wall clock time and date at job start Mon Mar 30 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48495 * 109.47024 * 240.00236 * 3 2 1 5 5 H 1.48505 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46898 * 119.99612 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.50703 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38271 * 120.37809 * 280.00167 * 12 9 7 14 14 N 1.31859 * 120.92684 * 180.02562 * 13 12 9 15 15 C 1.31819 * 121.79493 * 359.97058 * 14 13 12 16 16 C 1.38888 * 120.66162 * 0.02562 * 15 14 13 17 17 N 1.39707 * 120.49298 * 180.02562 * 16 15 14 18 18 C 1.38498 * 120.37618 * 99.72597 * 12 9 7 19 19 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 21 21 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 22 22 H 1.07997 * 119.54201 * 0.02562 * 13 12 9 23 23 H 1.08006 * 119.66461 * 180.02562 * 15 14 13 24 24 H 0.96999 * 119.99656 * 0.02562 * 17 16 15 25 25 H 0.96999 * 120.00390 * 180.02562 * 17 16 15 26 26 H 1.07994 * 120.82155 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.8421 -4.0415 -1.1742 14 7 3.7002 -5.0426 -1.1867 15 6 4.0115 -5.7043 -0.0900 16 6 3.4385 -5.3648 1.1288 17 7 3.7713 -6.0681 2.2891 18 6 2.5319 -4.3082 1.1782 19 1 -0.4850 0.8401 0.0004 20 1 -0.3005 -1.8576 -1.1911 21 1 0.9651 -2.5260 -2.0381 22 1 2.6140 -3.5243 -2.0945 23 1 4.7192 -6.5187 -0.1397 24 1 4.4072 -6.7994 2.2473 25 1 3.3666 -5.8252 3.1365 26 1 2.0726 -4.0163 2.1110 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104515787.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:16 Heat of formation + Delta-G solvation = 25.210153 kcal Electronic energy + Delta-G solvation = -11626.532919 eV Core-core repulsion = 9511.359331 eV Total energy + Delta-G solvation = -2115.173588 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.48300 -35.27777 -34.30691 -31.87331 -30.04393 -28.13724 -26.01590 -23.33331 -22.57832 -20.11334 -16.97161 -16.57465 -16.34661 -15.64040 -14.74244 -14.47683 -13.79815 -13.44682 -12.74347 -12.40225 -12.28602 -11.40575 -11.28922 -10.92461 -10.81739 -10.73159 -10.09809 -10.01756 -8.83978 -8.61472 -8.41960 -7.24915 -7.15489 -6.12189 -4.29391 2.07468 2.14525 3.23189 3.28062 3.31743 4.12228 4.29816 4.68718 5.10258 5.26242 5.53452 5.64765 5.95154 6.20878 6.43347 6.58986 6.74265 6.98492 7.27587 7.66350 7.71308 7.77522 7.96987 8.05486 8.62246 8.79354 8.89739 9.09604 9.42764 10.85308 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048925 B = 0.010260 C = 0.009877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.170641 B = 2728.520736 C = 2834.298268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.243 3.757 10 H 0.048 0.952 11 N -0.849 5.849 12 C -0.024 4.024 13 C 0.048 3.952 14 N -0.454 5.454 15 C -0.008 4.008 16 C 0.158 3.842 17 N -0.879 5.879 18 C -0.163 4.163 19 H 0.267 0.733 20 H 0.357 0.643 21 H 0.313 0.687 22 H 0.147 0.853 23 H 0.138 0.862 24 H 0.394 0.606 25 H 0.395 0.605 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -7.174 2.817 9.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.132 3.868 10 H 0.066 0.934 11 N -0.379 5.379 12 C -0.027 4.027 13 C -0.112 4.112 14 N -0.162 5.162 15 C -0.170 4.170 16 C 0.053 3.947 17 N -0.420 5.420 18 C -0.194 4.194 19 H 0.077 0.923 20 H 0.173 0.827 21 H 0.123 0.877 22 H 0.165 0.835 23 H 0.155 0.845 24 H 0.221 0.779 25 H 0.223 0.777 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.655 -7.991 2.253 9.518 hybrid contribution 0.583 2.023 1.090 2.371 sum 5.238 -5.968 3.343 8.616 Atomic orbital electron populations 1.69735 1.05852 1.27420 1.50166 1.25011 0.94952 0.99320 0.94225 0.86544 0.79554 0.82458 0.78826 1.20081 1.21135 1.20193 1.21758 0.93654 0.90887 1.52240 0.92588 1.17956 0.88903 0.87894 0.92021 0.93412 1.59521 1.18416 1.56124 1.03885 1.21234 0.94896 0.94386 0.92204 1.22206 0.95480 0.95212 0.98328 1.67387 1.12823 1.06411 1.29580 1.21904 1.04517 1.03199 0.87353 1.18798 0.94964 0.92643 0.88272 1.42249 1.52451 1.39624 1.07659 1.20905 1.01634 0.97361 0.99453 0.92325 0.82702 0.87718 0.83524 0.84509 0.77873 0.77712 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.54 55.43 0.64 -23.64 15 2 C 0.07 1.80 5.38 -17.82 -0.10 1.71 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 7 C -0.55 -14.60 8.71 -34.44 -0.30 -14.90 15 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 15 9 C 0.24 6.03 2.96 -70.01 -0.21 5.82 15 10 H 0.05 1.29 8.03 -51.93 -0.42 0.87 15 11 N -0.85 -20.19 9.02 -6.65 -0.06 -20.25 15 12 C -0.02 -0.53 4.90 -104.51 -0.51 -1.05 15 13 C 0.05 1.02 10.46 -17.53 -0.18 0.84 15 14 N -0.45 -9.18 10.35 -13.08 -0.14 -9.32 15 15 C -0.01 -0.14 11.06 -17.32 -0.19 -0.33 15 16 C 0.16 2.68 6.79 -83.63 -0.57 2.11 15 17 N -0.88 -10.68 9.10 32.49 0.30 -10.38 15 18 C -0.16 -3.20 9.69 -39.09 -0.38 -3.58 15 19 H 0.27 6.95 8.31 -40.82 -0.34 6.62 15 20 H 0.36 9.01 7.08 -39.29 -0.28 8.73 15 21 H 0.31 7.07 7.36 -39.29 -0.29 6.78 15 22 H 0.15 3.06 6.67 -52.49 -0.35 2.71 15 23 H 0.14 1.96 8.06 -52.48 -0.42 1.54 15 24 H 0.39 3.73 8.85 -40.82 -0.36 3.37 15 25 H 0.40 4.18 8.86 -40.82 -0.36 3.82 15 26 H 0.12 2.30 8.06 -52.49 -0.42 1.87 15 LS Contribution 229.83 15.07 3.46 3.46 Total: -1.00 -28.71 229.83 -5.70 -34.41 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -2.44 Total: 19.29 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.44 Total: -9.38 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.74 Total: -63.60 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.71 -5.70 -34.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104515787.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.619 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds