Wall clock time and date at job start Mon Mar 30 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48495 * 109.47024 * 240.00236 * 3 2 1 5 5 H 1.48505 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46898 * 119.99612 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.50703 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38271 * 120.37809 * 280.00167 * 12 9 7 14 14 N 1.31859 * 120.92684 * 180.02562 * 13 12 9 15 15 C 1.31819 * 121.79493 * 359.97058 * 14 13 12 16 16 C 1.38888 * 120.66162 * 0.02562 * 15 14 13 17 17 N 1.39707 * 120.49298 * 180.02562 * 16 15 14 18 18 C 1.38498 * 120.37618 * 99.72597 * 12 9 7 19 19 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 21 21 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 22 22 H 1.07997 * 119.54201 * 0.02562 * 13 12 9 23 23 H 1.08006 * 119.66461 * 180.02562 * 15 14 13 24 24 H 0.96999 * 119.99656 * 0.02562 * 17 16 15 25 25 H 0.96999 * 120.00390 * 180.02562 * 17 16 15 26 26 H 1.07994 * 120.82155 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.8421 -4.0415 -1.1742 14 7 3.7002 -5.0426 -1.1867 15 6 4.0115 -5.7043 -0.0900 16 6 3.4385 -5.3648 1.1288 17 7 3.7713 -6.0681 2.2891 18 6 2.5319 -4.3082 1.1782 19 1 -0.4850 0.8401 0.0004 20 1 -0.3005 -1.8576 -1.1911 21 1 0.9651 -2.5260 -2.0381 22 1 2.6140 -3.5243 -2.0945 23 1 4.7192 -6.5187 -0.1397 24 1 4.4072 -6.7994 2.2473 25 1 3.3666 -5.8252 3.1365 26 1 2.0726 -4.0163 2.1110 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104515787.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:16 Heat of formation + Delta-G solvation = 2.738259 kcal Electronic energy + Delta-G solvation = -11627.507373 eV Core-core repulsion = 9511.359331 eV Total energy + Delta-G solvation = -2116.148042 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.98405 -37.02389 -35.73107 -33.77423 -31.72733 -29.54953 -28.00631 -25.06498 -24.10115 -21.78350 -18.65141 -18.25009 -17.84009 -17.11576 -16.51770 -16.00424 -15.48054 -15.07666 -14.52992 -14.14007 -13.78340 -13.29419 -13.09715 -12.82525 -12.53731 -12.11176 -12.00342 -11.87936 -10.78475 -10.23028 -10.08646 -9.20305 -8.47212 -8.13147 -6.39476 0.54474 0.64175 1.39162 1.39991 1.48374 2.36580 2.97481 3.04497 3.15728 3.86136 4.08479 4.09847 4.43363 4.64754 4.70466 4.93969 5.18965 5.26105 5.62277 5.78388 5.87807 6.05633 6.52429 6.60817 6.89973 7.03590 7.10197 7.28430 7.37848 8.81127 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048925 B = 0.010260 C = 0.009877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.170641 B = 2728.520736 C = 2834.298268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.045 0.955 9 C 0.248 3.752 10 H 0.017 0.983 11 N -0.842 5.842 12 C -0.047 4.047 13 C 0.026 3.974 14 N -0.464 5.464 15 C -0.006 4.006 16 C 0.177 3.823 17 N -0.855 5.855 18 C -0.181 4.181 19 H 0.269 0.731 20 H 0.347 0.653 21 H 0.319 0.681 22 H 0.140 0.860 23 H 0.177 0.823 24 H 0.412 0.588 25 H 0.407 0.593 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -8.102 3.529 10.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.601 4.601 8 H 0.063 0.937 9 C 0.137 3.863 10 H 0.035 0.965 11 N -0.371 5.371 12 C -0.050 4.050 13 C -0.133 4.133 14 N -0.172 5.172 15 C -0.169 4.169 16 C 0.069 3.931 17 N -0.397 5.397 18 C -0.212 4.212 19 H 0.078 0.922 20 H 0.162 0.838 21 H 0.130 0.870 22 H 0.158 0.842 23 H 0.194 0.806 24 H 0.243 0.757 25 H 0.236 0.764 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.097 -8.948 2.989 11.233 hybrid contribution 0.190 2.168 0.957 2.377 sum 6.287 -6.780 3.946 10.053 Atomic orbital electron populations 1.69829 1.06870 1.28189 1.50371 1.25710 0.95751 1.02225 0.93810 0.85598 0.78405 0.78843 0.78697 1.19816 1.20426 1.20038 1.21944 0.93225 0.92279 1.52659 0.93707 1.17744 0.88861 0.88747 0.90917 0.96511 1.59484 1.18182 1.55398 1.04055 1.21016 0.95572 0.94702 0.93758 1.22044 0.96904 0.96473 0.97865 1.67395 1.12579 1.06243 1.30946 1.22577 1.04318 1.03268 0.86762 1.18741 0.93232 0.91490 0.89670 1.42193 1.51876 1.38955 1.06630 1.21007 1.02862 0.98499 0.98838 0.92155 0.83835 0.87037 0.84233 0.80574 0.75697 0.76389 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.29 11.54 21.45 0.25 -50.04 15 2 C 0.03 1.38 5.38 84.66 0.46 1.84 15 3 Si 0.96 42.81 29.54 68.60 2.03 44.84 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.56 -30.65 8.71 25.60 0.22 -30.42 15 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 15 9 C 0.25 12.69 2.96 43.42 0.13 12.82 15 10 H 0.02 0.95 8.03 -2.39 -0.02 0.93 15 11 N -0.84 -41.19 9.02 -174.95 -1.58 -42.77 15 12 C -0.05 -2.13 4.90 -19.79 -0.10 -2.23 15 13 C 0.03 1.12 10.46 84.70 0.89 2.00 15 14 N -0.46 -18.11 10.35 -195.29 -2.02 -20.14 15 15 C -0.01 -0.20 11.06 84.85 0.94 0.74 15 16 C 0.18 5.51 6.79 38.30 0.26 5.77 15 17 N -0.86 -17.40 9.10 -51.12 -0.47 -17.87 15 18 C -0.18 -6.99 9.69 22.59 0.22 -6.77 15 19 H 0.27 14.08 8.31 -92.70 -0.77 13.31 15 20 H 0.35 18.02 7.08 -89.69 -0.63 17.39 15 21 H 0.32 14.84 7.36 -89.70 -0.66 14.18 15 22 H 0.14 5.99 6.67 -2.91 -0.02 5.97 15 23 H 0.18 4.20 8.06 -2.91 -0.02 4.17 15 24 H 0.41 5.82 8.85 -92.71 -0.82 5.00 15 25 H 0.41 7.09 8.86 -92.71 -0.82 6.27 15 26 H 0.13 4.71 8.06 -2.91 -0.02 4.68 15 Total: -1.00 -61.47 229.83 -0.47 -61.94 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -1.69 Total: 40.29 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.01 Total: -16.26 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -3.82 Total: -130.81 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.47 -0.47 -61.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104515787.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.679 kcal (2) G-P(sol) polarization free energy of solvation -61.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds