Wall clock time and date at job start Mon Mar 30 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99853 * 2 1 4 4 H 1.48500 * 109.47304 * 269.99812 * 3 2 1 5 5 H 1.48500 * 109.47557 * 30.00180 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00393 * 3 2 1 7 7 C 1.37876 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99710 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00041 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.46900 * 59.99670 * 9 7 2 11 11 N 1.46900 * 109.46880 * 299.99979 * 9 7 2 12 12 C 1.50698 * 109.46902 * 179.97438 * 9 7 2 13 13 C 1.37918 * 119.57733 * 124.97728 * 12 9 7 14 14 C 1.39451 * 119.07036 * 179.97438 * 13 12 9 15 15 N 1.39164 * 120.87104 * 180.02562 * 14 13 12 16 16 C 1.39498 * 118.26541 * 0.02562 * 14 13 12 17 17 C 1.37875 * 119.06918 * 359.97438 * 16 14 13 18 18 N 1.31978 * 119.58258 * 305.00090 * 12 9 7 19 19 H 0.97001 * 119.99647 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99396 * 176.04850 * 11 9 7 21 21 H 1.00898 * 111.00027 * 299.99746 * 11 9 7 22 22 H 1.08005 * 120.46452 * 359.97438 * 13 12 9 23 23 H 0.97000 * 120.00770 * 179.97438 * 15 14 13 24 24 H 0.97008 * 119.99422 * 0.02562 * 15 14 13 25 25 H 1.08000 * 120.46296 * 180.25114 * 16 14 13 26 26 H 1.07999 * 119.57672 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8752 -0.6804 0.8888 11 7 4.0007 -0.5013 -1.2006 12 6 4.0138 -2.6149 -0.0010 13 6 4.8886 -3.0278 -0.9841 14 6 5.3471 -4.3447 -0.9735 15 7 6.2308 -4.8010 -1.9470 16 6 4.8969 -5.1929 0.0383 17 6 4.0220 -4.7019 0.9841 18 7 3.6107 -3.4484 0.9395 19 1 -0.4850 0.8401 0.0004 20 1 5.0073 -0.4313 -1.1924 21 1 3.6769 -0.9587 -2.0396 22 1 5.2140 -2.3408 -1.7513 23 1 6.5421 -5.7195 -1.9274 24 1 6.5362 -4.2001 -2.6447 25 1 5.2323 -6.2185 0.0827 26 1 3.6679 -5.3515 1.7709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104660395.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:09 Heat of formation + Delta-G solvation = 38.532609 kcal Electronic energy + Delta-G solvation = -11690.117127 eV Core-core repulsion = 9575.521245 eV Total energy + Delta-G solvation = -2114.595883 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.68920 -35.52718 -34.47557 -31.85358 -29.69856 -29.25948 -26.50060 -23.28370 -22.38999 -20.18158 -17.13423 -16.87163 -16.61207 -15.24188 -14.86523 -14.64058 -13.78730 -13.60857 -13.39900 -13.32107 -12.28537 -11.78938 -11.29890 -11.07496 -10.60863 -10.25864 -9.81687 -9.26048 -8.69410 -8.43480 -8.28691 -7.74285 -7.71907 -5.90398 -3.98432 1.77078 2.08417 3.63404 3.66321 3.79485 3.87636 4.52194 4.72602 5.05605 5.25122 5.30397 5.50718 5.75517 5.89822 6.00019 6.33201 6.37973 6.41286 6.95779 7.16469 7.53082 7.67891 7.74843 8.09030 8.31769 8.71889 8.95552 9.13560 9.71526 11.19485 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.056694 B = 0.011166 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.758296 B = 2507.005748 C = 2801.147244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.078 3.922 3 Si 0.937 3.063 4 H -0.281 1.281 5 H -0.319 1.319 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.223 3.777 10 H 0.063 0.937 11 N -0.838 5.838 12 C 0.183 3.817 13 C -0.271 4.271 14 C 0.246 3.754 15 N -0.873 5.873 16 C -0.278 4.278 17 C 0.137 3.863 18 N -0.501 5.501 19 H 0.262 0.738 20 H 0.311 0.689 21 H 0.337 0.663 22 H 0.124 0.876 23 H 0.396 0.604 24 H 0.397 0.603 25 H 0.120 0.880 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 -7.902 -3.138 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.125 4.125 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.248 1.248 6 H -0.200 1.200 7 C -0.538 4.538 8 H 0.093 0.907 9 C 0.113 3.887 10 H 0.081 0.919 11 N -0.368 5.368 12 C 0.045 3.955 13 C -0.296 4.296 14 C 0.134 3.866 15 N -0.412 5.412 16 C -0.304 4.304 17 C -0.021 4.021 18 N -0.212 5.212 19 H 0.072 0.928 20 H 0.123 0.877 21 H 0.151 0.849 22 H 0.142 0.858 23 H 0.224 0.776 24 H 0.225 0.775 25 H 0.138 0.862 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.474 -6.838 -2.215 13.539 hybrid contribution 1.731 -0.705 -1.278 2.264 sum 13.205 -7.543 -3.493 15.603 Atomic orbital electron populations 1.69961 1.06732 1.27152 1.50054 1.25021 0.94653 0.99916 0.92903 0.85876 0.78438 0.80964 0.77847 1.20766 1.24828 1.20047 1.20639 0.86562 0.94769 1.51869 0.90663 1.18658 0.97129 0.82540 0.90342 0.91918 1.59443 1.12931 1.58161 1.06271 1.22654 0.87204 0.98463 0.87197 1.21402 1.07498 0.95306 1.05419 1.17935 0.87966 0.92684 0.88028 1.42300 1.52057 1.15368 1.31493 1.21407 1.08310 1.00419 1.00222 1.22560 0.91444 0.92452 0.95646 1.67710 1.24613 1.03090 1.25831 0.92823 0.87706 0.84904 0.85807 0.77633 0.77485 0.86228 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.47 13.96 55.43 0.77 -27.69 15 2 C 0.08 2.34 5.47 -17.82 -0.10 2.24 15 3 Si 0.94 24.24 26.03 -169.99 -4.42 19.81 15 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 15 5 H -0.32 -8.34 7.11 56.52 0.40 -7.94 15 6 H -0.27 -6.90 6.54 56.52 0.37 -6.53 15 7 C -0.50 -14.54 9.11 -34.44 -0.31 -14.86 15 8 H 0.08 2.44 7.92 -52.49 -0.42 2.02 15 9 C 0.22 5.39 2.59 -70.02 -0.18 5.21 15 10 H 0.06 1.60 7.20 -51.93 -0.37 1.22 15 11 N -0.84 -17.50 6.06 -6.65 -0.04 -17.54 15 12 C 0.18 3.99 6.11 -82.65 -0.50 3.49 15 13 C -0.27 -4.83 8.95 -39.25 -0.35 -5.18 15 14 C 0.25 3.77 6.81 -83.61 -0.57 3.20 15 15 N -0.87 -9.33 9.08 32.53 0.30 -9.03 15 16 C -0.28 -4.26 10.00 -39.24 -0.39 -4.65 15 17 C 0.14 2.43 11.17 -17.61 -0.20 2.24 15 18 N -0.50 -11.09 9.96 -9.57 -0.10 -11.19 15 19 H 0.26 7.79 8.31 -40.82 -0.34 7.45 15 20 H 0.31 5.44 8.09 -39.29 -0.32 5.12 15 21 H 0.34 6.77 8.26 -39.29 -0.32 6.44 15 22 H 0.12 1.94 6.19 -52.48 -0.32 1.61 15 23 H 0.40 3.28 8.86 -40.82 -0.36 2.92 15 24 H 0.40 3.57 8.86 -40.82 -0.36 3.20 15 25 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.15 2.11 8.06 -52.49 -0.42 1.69 15 LS Contribution 225.86 15.07 3.40 3.40 Total: -1.00 -33.93 225.86 -5.19 -39.12 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -2.49 Total: 11.43 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.61 Total: -8.31 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: 0.93 Total: -65.46 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.42 Total: 19.81 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -33.93 -5.19 -39.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104660395.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.654 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds