Wall clock time and date at job start Mon Mar 30 2020 02:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99853 * 2 1 4 4 H 1.48500 * 109.47304 * 269.99812 * 3 2 1 5 5 H 1.48500 * 109.47557 * 30.00180 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00393 * 3 2 1 7 7 C 1.37876 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99710 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00041 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.46900 * 59.99670 * 9 7 2 11 11 N 1.46900 * 109.46880 * 299.99979 * 9 7 2 12 12 C 1.50698 * 109.46902 * 179.97438 * 9 7 2 13 13 C 1.37918 * 119.57733 * 124.97728 * 12 9 7 14 14 C 1.39451 * 119.07036 * 179.97438 * 13 12 9 15 15 N 1.39164 * 120.87104 * 180.02562 * 14 13 12 16 16 C 1.39498 * 118.26541 * 0.02562 * 14 13 12 17 17 C 1.37875 * 119.06918 * 359.97438 * 16 14 13 18 18 N 1.31978 * 119.58258 * 305.00090 * 12 9 7 19 19 H 0.97001 * 119.99647 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99396 * 176.04850 * 11 9 7 21 21 H 1.00898 * 111.00027 * 299.99746 * 11 9 7 22 22 H 1.08005 * 120.46452 * 359.97438 * 13 12 9 23 23 H 0.97000 * 120.00770 * 179.97438 * 15 14 13 24 24 H 0.97008 * 119.99422 * 0.02562 * 15 14 13 25 25 H 1.08000 * 120.46296 * 180.25114 * 16 14 13 26 26 H 1.07999 * 119.57672 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8752 -0.6804 0.8888 11 7 4.0007 -0.5013 -1.2006 12 6 4.0138 -2.6149 -0.0010 13 6 4.8886 -3.0278 -0.9841 14 6 5.3471 -4.3447 -0.9735 15 7 6.2308 -4.8010 -1.9470 16 6 4.8969 -5.1929 0.0383 17 6 4.0220 -4.7019 0.9841 18 7 3.6107 -3.4484 0.9395 19 1 -0.4850 0.8401 0.0004 20 1 5.0073 -0.4313 -1.1924 21 1 3.6769 -0.9587 -2.0396 22 1 5.2140 -2.3408 -1.7513 23 1 6.5421 -5.7195 -1.9274 24 1 6.5362 -4.2001 -2.6447 25 1 5.2323 -6.2185 0.0827 26 1 3.6679 -5.3515 1.7709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104660395.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:08 Heat of formation + Delta-G solvation = 9.575407 kcal Electronic energy + Delta-G solvation = -11691.372806 eV Core-core repulsion = 9575.521245 eV Total energy + Delta-G solvation = -2115.851561 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.06763 -37.04868 -35.90406 -34.02787 -31.10299 -30.54899 -28.47479 -25.00956 -23.72528 -21.82544 -19.02193 -18.20415 -18.00704 -16.73738 -16.55193 -16.16610 -15.50873 -15.23789 -14.81196 -14.59606 -14.30493 -13.60602 -12.84349 -12.63459 -12.43459 -12.05775 -11.74535 -11.45927 -10.71868 -10.14532 -9.76292 -9.39791 -8.87023 -8.19433 -6.31216 0.39733 0.77430 1.53481 1.61009 1.74354 2.56703 2.88770 3.07532 3.17442 3.72328 3.95543 4.08012 4.29629 4.49899 4.74311 4.93323 4.99185 5.12631 5.14784 5.63899 5.85367 6.18076 6.39845 6.47252 6.79322 6.94892 6.97157 7.42049 7.53886 8.94704 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.056694 B = 0.011166 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.758296 B = 2507.005748 C = 2801.147244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.021 3.979 3 Si 1.006 2.994 4 H -0.270 1.270 5 H -0.324 1.324 6 H -0.262 1.262 7 C -0.500 4.500 8 H 0.024 0.976 9 C 0.232 3.768 10 H 0.046 0.954 11 N -0.835 5.835 12 C 0.147 3.853 13 C -0.272 4.272 14 C 0.252 3.748 15 N -0.848 5.848 16 C -0.266 4.266 17 C 0.119 3.881 18 N -0.556 5.556 19 H 0.264 0.736 20 H 0.337 0.663 21 H 0.344 0.656 22 H 0.144 0.856 23 H 0.412 0.588 24 H 0.409 0.591 25 H 0.160 0.840 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.565 -8.669 -4.353 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.177 4.177 3 Si 0.835 3.165 4 H -0.196 1.196 5 H -0.254 1.254 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.043 0.957 9 C 0.121 3.879 10 H 0.063 0.937 11 N -0.367 5.367 12 C 0.009 3.991 13 C -0.297 4.297 14 C 0.137 3.863 15 N -0.389 5.389 16 C -0.291 4.291 17 C -0.038 4.038 18 N -0.269 5.269 19 H 0.073 0.927 20 H 0.151 0.849 21 H 0.158 0.842 22 H 0.162 0.838 23 H 0.243 0.757 24 H 0.239 0.761 25 H 0.177 0.823 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 14.440 -7.647 -3.467 16.703 hybrid contribution 0.890 -0.682 -0.928 1.456 sum 15.330 -8.329 -4.395 17.991 Atomic orbital electron populations 1.70104 1.08630 1.28095 1.52454 1.25930 0.95309 1.03746 0.92750 0.84766 0.77260 0.76111 0.78317 1.19561 1.25409 1.18676 1.20813 0.89645 0.92631 1.50765 0.95733 1.18191 0.93814 0.85051 0.90804 0.93671 1.59051 1.14871 1.57569 1.05225 1.22268 0.89866 0.97470 0.89471 1.21445 1.06702 0.96965 1.04627 1.17984 0.87917 0.91769 0.88676 1.42225 1.50025 1.16489 1.30123 1.21761 1.06509 1.02073 0.98780 1.22986 0.92167 0.91392 0.97228 1.67534 1.26738 1.05257 1.27406 0.92732 0.84891 0.84202 0.83835 0.75682 0.76062 0.82271 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.42 13.96 21.45 0.30 -62.12 15 2 C 0.02 1.25 5.47 84.65 0.46 1.72 15 3 Si 1.01 50.52 26.03 68.60 1.79 52.31 15 4 H -0.27 -12.97 7.11 99.48 0.71 -12.27 15 5 H -0.32 -16.40 7.11 99.48 0.71 -15.69 15 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 15 7 C -0.50 -30.18 9.11 25.60 0.23 -29.95 15 8 H 0.02 1.68 7.92 -2.91 -0.02 1.66 15 9 C 0.23 11.28 2.59 43.42 0.11 11.40 15 10 H 0.05 2.33 7.20 -2.39 -0.02 2.31 15 11 N -0.83 -33.49 6.06 -174.96 -1.06 -34.55 15 12 C 0.15 6.41 6.11 42.46 0.26 6.67 15 13 C -0.27 -9.09 8.95 22.49 0.20 -8.89 15 14 C 0.25 6.83 6.81 38.57 0.26 7.10 15 15 N -0.85 -14.07 9.08 -50.99 -0.46 -14.54 15 16 C -0.27 -7.26 10.00 22.49 0.22 -7.04 15 17 C 0.12 4.10 11.17 84.58 0.94 5.04 15 18 N -0.56 -25.04 9.96 -184.20 -1.83 -26.88 15 19 H 0.26 16.21 8.31 -92.71 -0.77 15.44 15 20 H 0.34 10.83 8.09 -89.69 -0.73 10.10 15 21 H 0.34 13.23 8.26 -89.70 -0.74 12.49 15 22 H 0.14 4.03 6.19 -2.91 -0.02 4.02 15 23 H 0.41 4.63 8.86 -92.71 -0.82 3.81 15 24 H 0.41 5.35 8.86 -92.70 -0.82 4.53 15 25 H 0.16 3.03 8.06 -2.91 -0.02 3.00 15 26 H 0.17 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -76.99 225.86 -0.49 -77.49 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -1.92 Total: 22.24 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 2.70 Total: -13.95 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -3.06 Total: -138.08 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.79 Total: 52.31 kcal Total: -76.99 -0.49 -77.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104660395.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.062 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds