Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48507 * 109.47344 * 270.00245 * 3 2 1 5 5 H 1.48506 * 109.47173 * 29.99924 * 3 2 1 6 6 H 1.48500 * 109.47527 * 149.99907 * 3 2 1 7 7 C 1.37873 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47406 * 299.99726 * 9 7 2 11 11 N 1.46897 * 109.47030 * 59.99788 * 9 7 2 12 12 C 1.50704 * 109.47031 * 179.97438 * 9 7 2 13 13 C 1.37919 * 120.46682 * 264.99864 * 12 9 7 14 14 N 1.31975 * 120.83964 * 180.02562 * 13 12 9 15 15 C 1.32014 * 121.91110 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.84311 * 0.02562 * 15 14 13 17 17 C 1.39455 * 120.46326 * 85.02541 * 12 9 7 18 18 N 1.39168 * 120.86833 * 359.97438 * 17 12 9 19 19 H 0.96999 * 120.00317 * 0.02562 * 1 2 3 20 20 H 1.00899 * 111.00395 * 296.04686 * 11 9 7 21 21 H 1.00905 * 111.00353 * 59.99965 * 11 9 7 22 22 H 1.08001 * 119.57574 * 0.04374 * 13 12 9 23 23 H 1.08002 * 119.57871 * 179.72629 * 15 14 13 24 24 H 1.08004 * 120.46360 * 179.97438 * 16 15 14 25 25 H 0.97003 * 119.99532 * 0.02562 * 18 17 12 26 26 H 0.97002 * 120.00183 * 180.02562 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2305 -3.6445 0.0005 13 6 2.6062 -4.2434 -1.1837 14 7 3.4628 -5.2472 -1.1922 15 6 3.9950 -5.7199 -0.0804 16 6 3.6715 -5.1766 1.1448 17 6 2.7692 -4.1141 1.1980 18 7 2.4162 -3.5375 2.4145 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3004 -1.8577 -1.1911 21 1 0.9653 -2.5259 -2.0381 22 1 2.1942 -3.8860 -2.1159 23 1 4.6890 -6.5459 -0.1307 24 1 4.1102 -5.5684 2.0506 25 1 1.7874 -2.7992 2.4369 26 1 2.7988 -3.8740 3.2399 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104661297.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = 26.220741 kcal Electronic energy + Delta-G solvation = -11848.948078 eV Core-core repulsion = 9733.818312 eV Total energy + Delta-G solvation = -2115.129765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.44249 -35.19357 -34.26684 -31.69424 -29.52893 -28.68485 -26.11161 -23.46575 -21.98570 -20.15109 -16.93768 -16.80201 -16.55291 -15.04384 -14.32913 -14.07962 -13.66213 -13.43745 -13.32826 -12.65283 -12.30781 -11.31081 -11.23352 -10.96309 -10.77639 -10.70982 -10.08390 -9.88048 -8.81969 -8.52568 -8.16274 -7.35847 -7.09801 -6.14155 -4.32888 2.03184 2.36451 3.17780 3.25688 3.29734 4.26465 4.44873 4.75687 5.05838 5.26080 5.53871 5.73103 6.04625 6.36667 6.47833 6.57223 6.71449 6.86212 7.48067 7.52852 7.68462 8.00914 8.05231 8.34379 8.60240 8.86632 8.90897 9.07767 9.40244 10.81260 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.046014 B = 0.011922 C = 0.011273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.363763 B = 2348.131737 C = 2483.237621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.254 3.746 10 H 0.042 0.958 11 N -0.850 5.850 12 C -0.153 4.153 13 C 0.130 3.870 14 N -0.535 5.535 15 C 0.107 3.893 16 C -0.264 4.264 17 C 0.247 3.753 18 N -0.862 5.862 19 H 0.266 0.734 20 H 0.356 0.644 21 H 0.313 0.687 22 H 0.149 0.851 23 H 0.139 0.861 24 H 0.118 0.882 25 H 0.410 0.590 26 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -5.020 3.057 7.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.144 3.856 10 H 0.060 0.940 11 N -0.381 5.381 12 C -0.160 4.160 13 C -0.024 4.024 14 N -0.247 5.247 15 C -0.051 4.051 16 C -0.290 4.290 17 C 0.132 3.868 18 N -0.401 5.401 19 H 0.076 0.924 20 H 0.172 0.828 21 H 0.123 0.877 22 H 0.167 0.833 23 H 0.157 0.843 24 H 0.136 0.864 25 H 0.241 0.759 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.738 -5.988 2.501 7.489 hybrid contribution 0.592 2.541 1.096 2.830 sum 4.330 -3.448 3.598 6.601 Atomic orbital electron populations 1.69737 1.05810 1.27293 1.50379 1.25024 0.94924 0.99294 0.94359 0.86523 0.79817 0.82950 0.78301 1.20530 1.21115 1.19956 1.21837 0.93619 0.90957 1.51845 0.92731 1.17664 0.88560 0.87829 0.91594 0.93998 1.59506 1.18452 1.56082 1.04015 1.20957 1.02487 1.00797 0.91748 1.22232 0.91978 0.90602 0.97606 1.67641 1.12206 1.14072 1.30816 1.22139 0.97284 0.97908 0.87740 1.21362 1.05899 1.02176 0.99541 1.17858 0.91458 0.90570 0.86873 1.42411 1.52406 1.40563 1.04710 0.92399 0.82785 0.87742 0.83343 0.84323 0.86448 0.75887 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 11.54 55.43 0.64 -23.10 15 2 C 0.07 1.73 5.38 -17.82 -0.10 1.64 15 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.54 -14.09 8.71 -34.44 -0.30 -14.39 15 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.25 6.13 2.44 -70.02 -0.17 5.96 15 10 H 0.04 1.09 6.92 -51.93 -0.36 0.73 15 11 N -0.85 -19.92 8.79 -6.65 -0.06 -19.98 15 12 C -0.15 -3.36 5.02 -104.28 -0.52 -3.89 15 13 C 0.13 2.78 10.43 -17.61 -0.18 2.59 15 14 N -0.53 -10.83 10.36 -13.35 -0.14 -10.96 15 15 C 0.11 1.89 11.17 -17.61 -0.20 1.69 15 16 C -0.26 -4.54 10.00 -39.25 -0.39 -4.94 15 17 C 0.25 4.82 6.79 -83.61 -0.57 4.25 15 18 N -0.86 -14.54 9.00 32.53 0.29 -14.25 15 19 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 20 H 0.36 8.88 7.08 -39.29 -0.28 8.60 15 21 H 0.31 6.99 7.23 -39.29 -0.28 6.71 15 22 H 0.15 3.05 6.30 -52.49 -0.33 2.72 15 23 H 0.14 1.95 8.06 -52.49 -0.42 1.52 15 24 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15 25 H 0.41 7.50 7.09 -40.82 -0.29 7.21 15 26 H 0.39 5.15 8.86 -40.82 -0.36 4.79 15 LS Contribution 226.15 15.07 3.41 3.41 Total: -1.00 -27.88 226.15 -5.60 -33.48 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -2.29 Total: 22.97 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.43 Total: -7.09 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: 0.74 Total: -68.29 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -27.88 -5.60 -33.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104661297.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.696 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds