Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48507 * 109.47344 * 270.00245 * 3 2 1 5 5 H 1.48506 * 109.47173 * 29.99924 * 3 2 1 6 6 H 1.48500 * 109.47527 * 149.99907 * 3 2 1 7 7 C 1.37873 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47406 * 299.99726 * 9 7 2 11 11 N 1.46897 * 109.47030 * 59.99788 * 9 7 2 12 12 C 1.50704 * 109.47031 * 179.97438 * 9 7 2 13 13 C 1.37919 * 120.46682 * 264.99864 * 12 9 7 14 14 N 1.31975 * 120.83964 * 180.02562 * 13 12 9 15 15 C 1.32014 * 121.91110 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.84311 * 0.02562 * 15 14 13 17 17 C 1.39455 * 120.46326 * 85.02541 * 12 9 7 18 18 N 1.39168 * 120.86833 * 359.97438 * 17 12 9 19 19 H 0.96999 * 120.00317 * 0.02562 * 1 2 3 20 20 H 1.00899 * 111.00395 * 296.04686 * 11 9 7 21 21 H 1.00905 * 111.00353 * 59.99965 * 11 9 7 22 22 H 1.08001 * 119.57574 * 0.04374 * 13 12 9 23 23 H 1.08002 * 119.57871 * 179.72629 * 15 14 13 24 24 H 1.08004 * 120.46360 * 179.97438 * 16 15 14 25 25 H 0.97003 * 119.99532 * 0.02562 * 18 17 12 26 26 H 0.97002 * 120.00183 * 180.02562 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2305 -3.6445 0.0005 13 6 2.6062 -4.2434 -1.1837 14 7 3.4628 -5.2472 -1.1922 15 6 3.9950 -5.7199 -0.0804 16 6 3.6715 -5.1766 1.1448 17 6 2.7692 -4.1141 1.1980 18 7 2.4162 -3.5375 2.4145 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3004 -1.8577 -1.1911 21 1 0.9653 -2.5259 -2.0381 22 1 2.1942 -3.8860 -2.1159 23 1 4.6890 -6.5459 -0.1307 24 1 4.1102 -5.5684 2.0506 25 1 1.7874 -2.7992 2.4369 26 1 2.7988 -3.8740 3.2399 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104661297.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = 4.848903 kcal Electronic energy + Delta-G solvation = -11849.874830 eV Core-core repulsion = 9733.818312 eV Total energy + Delta-G solvation = -2116.056518 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.94819 -36.91280 -35.84172 -33.58945 -31.04984 -30.24987 -28.04258 -25.17773 -23.48618 -21.84348 -18.61669 -18.37449 -18.23575 -16.85557 -16.02015 -15.58311 -15.22214 -15.00290 -14.92334 -14.38691 -14.00685 -13.17727 -13.02234 -12.82900 -12.44024 -12.26125 -11.96478 -11.63227 -10.77090 -10.09932 -9.67874 -9.22157 -8.66177 -8.09167 -6.37483 0.54365 0.85998 1.35557 1.39395 1.47694 2.35950 3.03264 3.08603 3.24192 3.85649 4.15754 4.18979 4.57384 4.75562 4.87314 5.01544 5.18340 5.25719 5.63662 5.72265 5.97100 6.10561 6.57148 6.63072 6.93332 7.04327 7.10884 7.36940 7.44402 8.81384 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.046014 B = 0.011922 C = 0.011273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.363763 B = 2348.131737 C = 2483.237621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.039 0.961 9 C 0.262 3.738 10 H 0.019 0.981 11 N -0.845 5.845 12 C -0.187 4.187 13 C 0.120 3.880 14 N -0.553 5.553 15 C 0.108 3.892 16 C -0.256 4.256 17 C 0.237 3.763 18 N -0.852 5.852 19 H 0.268 0.732 20 H 0.346 0.654 21 H 0.317 0.683 22 H 0.144 0.856 23 H 0.180 0.820 24 H 0.157 0.843 25 H 0.402 0.598 26 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -5.653 3.822 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.151 3.849 10 H 0.037 0.963 11 N -0.374 5.374 12 C -0.194 4.194 13 C -0.034 4.034 14 N -0.266 5.266 15 C -0.049 4.049 16 C -0.281 4.281 17 C 0.121 3.879 18 N -0.391 5.391 19 H 0.077 0.923 20 H 0.161 0.839 21 H 0.128 0.872 22 H 0.161 0.839 23 H 0.197 0.803 24 H 0.175 0.825 25 H 0.232 0.768 26 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.044 -6.641 3.289 8.964 hybrid contribution 0.224 2.660 0.897 2.816 sum 5.268 -3.981 4.186 7.818 Atomic orbital electron populations 1.69821 1.06697 1.27949 1.50714 1.25636 0.95634 1.01886 0.94125 0.85630 0.78546 0.79708 0.78101 1.20442 1.20573 1.20153 1.21926 0.92851 0.92249 1.51953 0.94302 1.17449 0.88462 0.88331 0.90640 0.96333 1.59486 1.18276 1.55374 1.04277 1.20849 1.03757 1.01407 0.93390 1.22196 0.92658 0.91283 0.97303 1.67682 1.12556 1.14031 1.32295 1.22871 0.96729 0.98149 0.87151 1.21742 1.04551 1.00743 1.01089 1.18115 0.91727 0.91246 0.86804 1.42365 1.51892 1.39955 1.04933 0.92274 0.83918 0.87217 0.83888 0.80264 0.82516 0.76788 0.76143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.73 11.54 21.45 0.25 -48.48 15 2 C 0.03 1.45 5.38 84.65 0.46 1.90 15 3 Si 0.95 42.06 29.54 68.60 2.03 44.08 15 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 7 C -0.55 -28.83 8.71 25.60 0.22 -28.60 15 8 H 0.04 2.12 7.74 -2.91 -0.02 2.10 15 9 C 0.26 12.83 2.44 43.42 0.11 12.94 15 10 H 0.02 0.99 6.92 -2.39 -0.02 0.98 15 11 N -0.84 -40.36 8.79 -174.96 -1.54 -41.90 15 12 C -0.19 -8.20 5.02 -19.65 -0.10 -8.30 15 13 C 0.12 5.09 10.43 84.60 0.88 5.97 15 14 N -0.55 -21.52 10.36 -196.16 -2.03 -23.55 15 15 C 0.11 3.46 11.17 84.58 0.94 4.40 15 16 C -0.26 -7.95 10.00 22.49 0.22 -7.73 15 17 C 0.24 8.89 6.79 38.57 0.26 9.15 15 18 N -0.85 -27.58 9.00 -50.99 -0.46 -28.04 15 19 H 0.27 13.67 8.31 -92.71 -0.77 12.90 15 20 H 0.35 17.61 7.08 -89.69 -0.63 16.98 15 21 H 0.32 14.50 7.23 -89.69 -0.65 13.86 15 22 H 0.14 6.00 6.30 -2.91 -0.02 5.98 15 23 H 0.18 4.18 8.06 -2.91 -0.02 4.16 15 24 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 25 H 0.40 14.61 7.09 -92.71 -0.66 13.96 15 26 H 0.41 9.81 8.86 -92.71 -0.82 8.99 15 Total: -1.00 -58.72 226.15 -0.27 -58.99 By element: Atomic # 1 Polarization: 50.67 SS G_CDS: -1.52 Total: 49.16 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 3.00 Total: -10.26 kcal Atomic # 7 Polarization: -138.19 SS G_CDS: -3.78 Total: -141.97 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -58.72 -0.27 -58.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104661297.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.838 kcal (2) G-P(sol) polarization free energy of solvation -58.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds