Wall clock time and date at job start Mon Mar 30 2020 02:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86804 * 120.00404 * 2 1 4 4 H 1.48500 * 109.46918 * 239.99978 * 3 2 1 5 5 H 1.48503 * 109.46747 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47225 * 119.99669 * 3 2 1 7 7 C 1.37885 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99616 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47190 * 59.99718 * 9 7 2 11 11 N 1.46900 * 109.46856 * 299.99548 * 9 7 2 12 12 C 1.50699 * 109.46752 * 180.02562 * 9 7 2 13 13 C 1.37914 * 120.47064 * 100.02043 * 12 9 7 14 14 N 1.31981 * 120.84455 * 179.97438 * 13 12 9 15 15 C 1.32006 * 121.90704 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.84618 * 0.02562 * 15 14 13 17 17 C 1.39457 * 120.46664 * 279.99402 * 12 9 7 18 18 N 1.39173 * 120.86378 * 0.04874 * 17 12 9 19 19 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 20 20 H 1.00902 * 110.99915 * 176.05126 * 11 9 7 21 21 H 1.00903 * 111.00296 * 300.00143 * 11 9 7 22 22 H 1.08005 * 119.57414 * 359.97438 * 13 12 9 23 23 H 1.08002 * 119.57432 * 180.27949 * 15 14 13 24 24 H 1.08006 * 120.46366 * 179.97438 * 16 15 14 25 25 H 0.96995 * 120.00391 * 179.97438 * 18 17 12 26 26 H 0.97004 * 119.99642 * 359.97290 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6446 0.0018 13 6 2.5266 -4.3100 1.1729 14 7 3.3827 -5.3144 1.1824 15 6 3.9886 -5.7253 0.0838 16 6 3.7471 -5.1131 -1.1277 17 6 2.8492 -4.0470 -1.1813 18 7 2.5781 -3.4017 -2.3842 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1579 -3.4133 1.1913 21 1 0.9637 -2.5251 2.0390 22 1 2.0520 -4.0053 2.0939 23 1 4.6791 -6.5541 0.1341 24 1 4.2465 -5.4540 -2.0226 25 1 3.0160 -3.6917 -3.1997 26 1 1.9511 -2.6619 -2.4071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104661302.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:12 Heat of formation + Delta-G solvation = 34.148129 kcal Electronic energy + Delta-G solvation = -11850.932281 eV Core-core repulsion = 9736.146273 eV Total energy + Delta-G solvation = -2114.786008 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.55934 -35.16931 -34.23963 -31.75615 -29.58196 -28.66715 -26.18101 -23.39975 -22.00146 -20.22615 -16.94336 -16.82835 -16.44689 -14.88953 -14.35265 -14.09530 -14.00235 -13.54977 -13.23016 -13.01191 -12.29631 -11.35994 -11.17523 -10.88373 -10.82808 -10.65625 -9.96149 -9.37811 -8.76878 -8.49301 -8.23134 -7.23606 -7.08754 -5.92582 -4.08881 1.90208 2.27482 3.31051 3.36548 3.39836 4.39901 4.42592 4.65255 5.13836 5.30001 5.43922 5.70474 5.96765 6.18782 6.28157 6.46345 6.60274 6.75222 7.35489 7.37440 7.85696 7.96840 8.12452 8.31759 8.59038 8.78523 8.96669 9.10264 9.60753 11.10492 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.046058 B = 0.012059 C = 0.011218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.785259 B = 2321.383397 C = 2495.414817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.085 3.915 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.268 3.732 10 H 0.042 0.958 11 N -0.810 5.810 12 C -0.198 4.198 13 C 0.111 3.889 14 N -0.533 5.533 15 C 0.108 3.892 16 C -0.263 4.263 17 C 0.254 3.746 18 N -0.858 5.858 19 H 0.257 0.743 20 H 0.299 0.701 21 H 0.319 0.681 22 H 0.144 0.856 23 H 0.140 0.860 24 H 0.118 0.882 25 H 0.390 0.610 26 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -6.644 -3.311 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.157 3.843 10 H 0.060 0.940 11 N -0.337 5.337 12 C -0.207 4.207 13 C -0.043 4.043 14 N -0.245 5.245 15 C -0.050 4.050 16 C -0.290 4.290 17 C 0.138 3.862 18 N -0.397 5.397 19 H 0.067 0.933 20 H 0.110 0.890 21 H 0.133 0.867 22 H 0.161 0.839 23 H 0.158 0.842 24 H 0.136 0.864 25 H 0.217 0.783 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.750 -6.244 -2.743 7.783 hybrid contribution 0.928 0.688 -0.961 1.503 sum 4.678 -5.556 -3.705 8.153 Atomic orbital electron populations 1.70083 1.05635 1.25903 1.46387 1.24955 0.94620 0.98497 0.94177 0.86827 0.79734 0.83703 0.78565 1.20496 1.21326 1.20318 1.20792 0.92098 0.89375 1.54719 0.93073 1.17893 0.87070 0.88535 0.90815 0.93995 1.59143 1.28030 1.42101 1.04406 1.22240 1.04148 1.02125 0.92150 1.22242 0.93919 0.91059 0.97129 1.67604 1.10680 1.15653 1.30561 1.22148 0.97008 0.97912 0.87889 1.21424 1.05825 1.01802 0.99916 1.17870 0.91307 0.89831 0.87142 1.42455 1.51434 1.39417 1.06381 0.93315 0.89027 0.86748 0.83890 0.84239 0.86375 0.78327 0.75535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.77 12.77 55.43 0.71 -23.06 15 2 C 0.08 2.28 5.39 -17.82 -0.10 2.18 15 3 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.53 -14.00 8.55 -34.44 -0.29 -14.29 15 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 15 9 C 0.27 6.35 2.25 -70.02 -0.16 6.19 15 10 H 0.04 1.08 7.20 -51.93 -0.37 0.70 15 11 N -0.81 -18.55 8.02 -6.65 -0.05 -18.61 15 12 C -0.20 -4.19 5.04 -104.29 -0.53 -4.71 15 13 C 0.11 2.25 10.41 -17.61 -0.18 2.07 15 14 N -0.53 -10.43 10.36 -13.35 -0.14 -10.57 15 15 C 0.11 1.86 11.17 -17.61 -0.20 1.66 15 16 C -0.26 -4.42 10.00 -39.25 -0.39 -4.81 15 17 C 0.25 4.82 6.79 -83.61 -0.57 4.25 15 18 N -0.86 -14.22 9.00 32.53 0.29 -13.93 15 19 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 20 H 0.30 6.17 9.06 -39.29 -0.36 5.81 15 21 H 0.32 7.04 7.31 -39.29 -0.29 6.75 15 22 H 0.14 2.75 6.26 -52.48 -0.33 2.42 15 23 H 0.14 1.90 8.06 -52.49 -0.42 1.48 15 24 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15 25 H 0.39 5.05 8.86 -40.82 -0.36 4.69 15 26 H 0.41 7.50 7.08 -40.82 -0.29 7.21 15 LS Contribution 228.55 15.07 3.44 3.44 Total: -1.00 -29.56 228.55 -5.56 -35.13 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -2.38 Total: 19.15 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.41 Total: -7.46 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: 0.81 Total: -66.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.56 -5.56 -35.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104661302.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.274 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds