Wall clock time and date at job start Mon Mar 30 2020 02:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86804 * 120.00404 * 2 1 4 4 H 1.48500 * 109.46918 * 239.99978 * 3 2 1 5 5 H 1.48503 * 109.46747 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47225 * 119.99669 * 3 2 1 7 7 C 1.37885 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99616 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47190 * 59.99718 * 9 7 2 11 11 N 1.46900 * 109.46856 * 299.99548 * 9 7 2 12 12 C 1.50699 * 109.46752 * 180.02562 * 9 7 2 13 13 C 1.37914 * 120.47064 * 100.02043 * 12 9 7 14 14 N 1.31981 * 120.84455 * 179.97438 * 13 12 9 15 15 C 1.32006 * 121.90704 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.84618 * 0.02562 * 15 14 13 17 17 C 1.39457 * 120.46664 * 279.99402 * 12 9 7 18 18 N 1.39173 * 120.86378 * 0.04874 * 17 12 9 19 19 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 20 20 H 1.00902 * 110.99915 * 176.05126 * 11 9 7 21 21 H 1.00903 * 111.00296 * 300.00143 * 11 9 7 22 22 H 1.08005 * 119.57414 * 359.97438 * 13 12 9 23 23 H 1.08002 * 119.57432 * 180.27949 * 15 14 13 24 24 H 1.08006 * 120.46366 * 179.97438 * 16 15 14 25 25 H 0.96995 * 120.00391 * 179.97438 * 18 17 12 26 26 H 0.97004 * 119.99642 * 359.97290 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6446 0.0018 13 6 2.5266 -4.3100 1.1729 14 7 3.3827 -5.3144 1.1824 15 6 3.9886 -5.7253 0.0838 16 6 3.7471 -5.1131 -1.1277 17 6 2.8492 -4.0470 -1.1813 18 7 2.5781 -3.4017 -2.3842 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1579 -3.4133 1.1913 21 1 0.9637 -2.5251 2.0390 22 1 2.0520 -4.0053 2.0939 23 1 4.6791 -6.5541 0.1341 24 1 4.2465 -5.4540 -2.0226 25 1 3.0160 -3.6917 -3.1997 26 1 1.9511 -2.6619 -2.4071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104661302.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:11 Heat of formation + Delta-G solvation = 11.112444 kcal Electronic energy + Delta-G solvation = -11851.931184 eV Core-core repulsion = 9736.146273 eV Total energy + Delta-G solvation = -2115.784910 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.02252 -36.81180 -35.80026 -33.71644 -31.03581 -30.19511 -28.11748 -25.10020 -23.45612 -21.90852 -18.54363 -18.31242 -18.19575 -16.73622 -16.02962 -15.71825 -15.53907 -15.00363 -14.73736 -14.51188 -14.17910 -13.23956 -12.91511 -12.72294 -12.37264 -12.28363 -11.81241 -11.32745 -10.57068 -10.23124 -9.72001 -8.92025 -8.64974 -7.96175 -6.18589 0.46099 0.81705 1.42648 1.45249 1.51432 2.46529 3.05028 3.18330 3.26263 3.76874 4.09948 4.26565 4.48385 4.54407 4.81374 5.01204 5.10451 5.25379 5.55139 5.76120 5.94084 6.16865 6.56311 6.66161 7.02421 7.11376 7.26694 7.34367 7.54136 9.04782 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.046058 B = 0.012059 C = 0.011218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.785259 B = 2321.383397 C = 2495.414817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.037 0.963 9 C 0.277 3.723 10 H 0.018 0.982 11 N -0.821 5.821 12 C -0.227 4.227 13 C 0.105 3.895 14 N -0.551 5.551 15 C 0.109 3.891 16 C -0.256 4.256 17 C 0.243 3.757 18 N -0.850 5.850 19 H 0.256 0.744 20 H 0.311 0.689 21 H 0.323 0.677 22 H 0.143 0.857 23 H 0.180 0.820 24 H 0.156 0.844 25 H 0.408 0.592 26 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -7.420 -3.958 10.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.056 0.944 9 C 0.166 3.834 10 H 0.035 0.965 11 N -0.349 5.349 12 C -0.236 4.236 13 C -0.049 4.049 14 N -0.264 5.264 15 C -0.048 4.048 16 C -0.282 4.282 17 C 0.126 3.874 18 N -0.388 5.388 19 H 0.065 0.935 20 H 0.123 0.877 21 H 0.136 0.864 22 H 0.161 0.839 23 H 0.197 0.803 24 H 0.174 0.826 25 H 0.238 0.762 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.177 -7.037 -3.419 9.381 hybrid contribution 0.540 0.832 -0.794 1.271 sum 5.717 -6.205 -4.213 9.430 Atomic orbital electron populations 1.70193 1.06799 1.26395 1.47741 1.25576 0.95290 1.01308 0.94102 0.85914 0.78537 0.80328 0.78418 1.19807 1.21091 1.20622 1.20966 0.91514 0.90877 1.53921 0.94442 1.17532 0.87126 0.88764 0.89979 0.96452 1.58997 1.28421 1.43062 1.04375 1.21984 1.05361 1.02519 0.93777 1.22260 0.94307 0.91434 0.96926 1.67661 1.11135 1.15651 1.31923 1.22861 0.96421 0.98234 0.87296 1.21784 1.04687 1.00362 1.01345 1.18128 0.91558 0.90610 0.87080 1.42412 1.51037 1.38745 1.06652 0.93524 0.87731 0.86399 0.83945 0.80335 0.82624 0.76204 0.76539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.65 12.77 21.45 0.27 -49.38 15 2 C 0.04 2.23 5.39 84.66 0.46 2.69 15 3 Si 0.94 43.00 29.54 68.60 2.03 45.03 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 7 C -0.53 -28.33 8.55 25.60 0.22 -28.11 15 8 H 0.04 2.05 7.74 -2.91 -0.02 2.03 15 9 C 0.28 13.30 2.25 43.42 0.10 13.40 15 10 H 0.02 0.92 7.20 -2.39 -0.02 0.91 15 11 N -0.82 -38.10 8.02 -174.96 -1.40 -39.50 15 12 C -0.23 -9.54 5.04 -19.65 -0.10 -9.64 15 13 C 0.10 4.21 10.41 84.59 0.88 5.09 15 14 N -0.55 -20.58 10.36 -196.16 -2.03 -22.61 15 15 C 0.11 3.37 11.17 84.58 0.94 4.32 15 16 C -0.26 -7.73 10.00 22.48 0.22 -7.51 15 17 C 0.24 8.83 6.79 38.57 0.26 9.09 15 18 N -0.85 -27.01 9.00 -50.99 -0.46 -27.47 15 19 H 0.26 13.97 8.31 -92.71 -0.77 13.20 15 20 H 0.31 13.01 9.06 -89.69 -0.81 12.19 15 21 H 0.32 14.43 7.31 -89.69 -0.66 13.77 15 22 H 0.14 5.52 6.26 -2.91 -0.02 5.50 15 23 H 0.18 4.03 8.06 -2.91 -0.02 4.01 15 24 H 0.16 3.48 8.06 -2.91 -0.02 3.45 15 25 H 0.41 9.64 8.86 -92.71 -0.82 8.82 15 26 H 0.40 14.61 7.08 -92.71 -0.66 13.95 15 Total: -1.00 -62.09 228.55 -0.31 -62.40 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -1.70 Total: 42.20 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 2.99 Total: -10.68 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -3.62 Total: -138.95 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -62.09 -0.31 -62.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104661302.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.515 kcal (2) G-P(sol) polarization free energy of solvation -62.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds