Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47317 * 269.99829 * 3 2 1 5 5 H 1.48500 * 109.47134 * 30.00329 * 3 2 1 6 6 H 1.48505 * 109.47326 * 149.99860 * 3 2 1 7 7 C 1.37878 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47706 * 300.00204 * 9 7 2 11 11 N 1.46906 * 109.47064 * 60.00000 * 9 7 2 12 12 C 1.50701 * 109.47065 * 180.02562 * 9 7 2 13 13 N 1.31812 * 119.67363 * 284.99900 * 12 9 7 14 14 C 1.31857 * 121.80381 * 179.97438 * 13 12 9 15 15 C 1.38279 * 120.92220 * 0.02562 * 14 13 12 16 16 C 1.38494 * 119.24357 * 359.97438 * 15 14 13 17 17 C 1.38893 * 119.67116 * 104.73206 * 12 9 7 18 18 N 1.39711 * 120.49045 * 0.02562 * 17 12 9 19 19 H 0.97003 * 119.99844 * 0.02562 * 1 2 3 20 20 H 1.00896 * 111.00309 * 296.04459 * 11 9 7 21 21 H 1.00902 * 110.99923 * 60.00622 * 11 9 7 22 22 H 1.07999 * 119.53891 * 180.02562 * 14 13 12 23 23 H 1.08002 * 120.37051 * 180.02562 * 15 14 13 24 24 H 1.07997 * 120.81899 * 180.02562 * 16 15 14 25 25 H 0.97002 * 120.00173 * 0.02562 * 18 17 12 26 26 H 0.97005 * 119.99707 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 7 2.8797 -3.9480 -1.1068 14 6 3.7459 -4.9409 -1.1540 15 6 4.0080 -5.7091 -0.0345 16 6 3.3485 -5.4259 1.1500 17 6 2.4439 -4.3666 1.1666 18 7 1.7575 -4.0389 2.3385 19 1 -0.4850 0.8401 -0.0004 20 1 -0.3014 -1.8573 -1.1908 21 1 0.9637 -2.5252 -2.0390 22 1 4.2579 -5.1573 -2.0800 23 1 4.7197 -6.5201 -0.0830 24 1 3.5340 -6.0091 2.0397 25 1 1.1261 -3.3025 2.3410 26 1 1.9119 -4.5482 3.1496 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104670571.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = 30.651423 kcal Electronic energy + Delta-G solvation = -11832.385077 eV Core-core repulsion = 9717.447441 eV Total energy + Delta-G solvation = -2114.937637 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.47849 -34.80870 -34.21357 -31.71038 -30.19659 -28.13950 -25.97078 -23.61120 -22.03690 -20.19538 -17.05011 -16.48279 -16.25191 -15.43299 -14.54495 -14.10073 -13.79396 -13.42208 -12.73555 -12.52173 -11.98782 -11.78454 -11.09644 -10.88807 -10.72088 -10.58135 -10.01185 -9.78119 -8.80716 -8.59123 -8.50732 -7.15870 -6.87807 -6.04019 -4.20970 2.03168 2.19852 3.25213 3.31947 3.36526 4.34377 4.43907 4.75300 5.15767 5.40596 5.42483 5.54564 5.80805 6.14907 6.41042 6.65484 6.76136 6.88878 7.20282 7.59254 7.78726 8.00706 8.13592 8.31973 8.71658 8.98341 9.10675 9.25447 9.51076 10.91320 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.011682 C = 0.011406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.480397 B = 2396.336816 C = 2454.241987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.262 3.738 10 H 0.045 0.955 11 N -0.847 5.847 12 C 0.120 3.880 13 N -0.437 5.437 14 C 0.027 3.973 15 C -0.154 4.154 16 C -0.172 4.172 17 C 0.164 3.836 18 N -0.869 5.869 19 H 0.265 0.735 20 H 0.352 0.648 21 H 0.325 0.675 22 H 0.139 0.861 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.407 0.593 26 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -7.188 2.878 8.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.150 3.850 10 H 0.063 0.937 11 N -0.377 5.377 12 C -0.026 4.026 13 N -0.145 5.145 14 C -0.130 4.130 15 C -0.174 4.174 16 C -0.203 4.203 17 C 0.056 3.944 18 N -0.410 5.410 19 H 0.075 0.925 20 H 0.168 0.832 21 H 0.135 0.865 22 H 0.157 0.843 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.240 0.760 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.667 -7.310 2.359 8.512 hybrid contribution 1.004 1.414 0.973 1.988 sum 4.671 -5.896 3.331 8.227 Atomic orbital electron populations 1.69746 1.05754 1.27149 1.50951 1.24994 0.94960 0.99231 0.94563 0.86494 0.79765 0.82908 0.78234 1.20554 1.21163 1.20008 1.21768 0.93620 0.90853 1.51069 0.92791 1.17748 0.88058 0.87275 0.91872 0.93723 1.59340 1.18398 1.55559 1.04407 1.21640 0.97655 0.96662 0.86607 1.67337 1.04994 1.14228 1.27929 1.22362 0.98553 0.94258 0.97864 1.21637 1.00924 1.01070 0.93789 1.20817 1.00811 0.99696 0.98957 1.18702 0.92793 0.94064 0.88863 1.42526 1.49270 1.40004 1.09248 0.92511 0.83242 0.86548 0.84330 0.86305 0.86321 0.76046 0.78481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 11.54 55.43 0.64 -23.99 15 2 C 0.06 1.75 5.38 -17.82 -0.10 1.65 15 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.53 -14.67 8.71 -34.44 -0.30 -14.97 15 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.26 6.65 2.88 -70.01 -0.20 6.45 15 10 H 0.05 1.17 5.90 -51.93 -0.31 0.86 15 11 N -0.85 -21.44 9.14 -6.65 -0.06 -21.50 15 12 C 0.12 2.79 5.68 -82.36 -0.47 2.32 15 13 N -0.44 -9.89 9.70 -9.31 -0.09 -9.98 15 14 C 0.03 0.51 11.18 -17.53 -0.20 0.31 15 15 C -0.15 -2.52 10.10 -39.47 -0.40 -2.92 15 16 C -0.17 -2.93 10.05 -39.09 -0.39 -3.32 15 17 C 0.16 3.24 6.76 -83.63 -0.57 2.68 15 18 N -0.87 -14.69 9.01 32.49 0.29 -14.40 15 19 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 20 H 0.35 9.28 7.08 -39.29 -0.28 9.00 15 21 H 0.32 8.26 8.54 -39.29 -0.34 7.93 15 22 H 0.14 2.16 8.06 -52.49 -0.42 1.73 15 23 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 24 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.41 7.39 6.58 -40.82 -0.27 7.12 15 26 H 0.39 5.10 8.86 -40.82 -0.36 4.73 15 LS Contribution 228.16 15.07 3.44 3.44 Total: -1.00 -29.38 228.16 -5.78 -35.16 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -2.36 Total: 22.76 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.62 Total: -7.80 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: 0.78 Total: -69.87 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.38 -5.78 -35.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104670571.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.811 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds