Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47317 * 269.99829 * 3 2 1 5 5 H 1.48500 * 109.47134 * 30.00329 * 3 2 1 6 6 H 1.48505 * 109.47326 * 149.99860 * 3 2 1 7 7 C 1.37878 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47706 * 300.00204 * 9 7 2 11 11 N 1.46906 * 109.47064 * 60.00000 * 9 7 2 12 12 C 1.50701 * 109.47065 * 180.02562 * 9 7 2 13 13 N 1.31812 * 119.67363 * 284.99900 * 12 9 7 14 14 C 1.31857 * 121.80381 * 179.97438 * 13 12 9 15 15 C 1.38279 * 120.92220 * 0.02562 * 14 13 12 16 16 C 1.38494 * 119.24357 * 359.97438 * 15 14 13 17 17 C 1.38893 * 119.67116 * 104.73206 * 12 9 7 18 18 N 1.39711 * 120.49045 * 0.02562 * 17 12 9 19 19 H 0.97003 * 119.99844 * 0.02562 * 1 2 3 20 20 H 1.00896 * 111.00309 * 296.04459 * 11 9 7 21 21 H 1.00902 * 110.99923 * 60.00622 * 11 9 7 22 22 H 1.07999 * 119.53891 * 180.02562 * 14 13 12 23 23 H 1.08002 * 120.37051 * 180.02562 * 15 14 13 24 24 H 1.07997 * 120.81899 * 180.02562 * 16 15 14 25 25 H 0.97002 * 120.00173 * 0.02562 * 18 17 12 26 26 H 0.97005 * 119.99707 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 7 2.8797 -3.9480 -1.1068 14 6 3.7459 -4.9409 -1.1540 15 6 4.0080 -5.7091 -0.0345 16 6 3.3485 -5.4259 1.1500 17 6 2.4439 -4.3666 1.1666 18 7 1.7575 -4.0389 2.3385 19 1 -0.4850 0.8401 -0.0004 20 1 -0.3014 -1.8573 -1.1908 21 1 0.9637 -2.5252 -2.0390 22 1 4.2579 -5.1573 -2.0800 23 1 4.7197 -6.5201 -0.0830 24 1 3.5340 -6.0091 2.0397 25 1 1.1261 -3.3025 2.3410 26 1 1.9119 -4.5482 3.1496 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104670571.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = 7.403284 kcal Electronic energy + Delta-G solvation = -11833.393192 eV Core-core repulsion = 9717.447441 eV Total energy + Delta-G solvation = -2115.945752 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.95835 -36.60853 -35.74254 -33.56039 -31.85770 -29.64772 -27.95754 -25.33535 -23.48377 -21.89757 -18.76022 -18.23233 -17.72803 -17.09413 -16.31188 -15.58738 -15.53256 -15.13318 -14.37529 -14.12418 -13.63364 -13.41249 -13.00528 -12.79633 -12.65300 -12.02081 -11.93159 -11.68296 -10.71003 -10.18809 -10.02453 -9.16360 -8.40017 -8.04642 -6.34349 0.59091 0.78080 1.35779 1.38018 1.47590 2.37099 3.05249 3.09175 3.26311 3.93325 4.11933 4.20220 4.44421 4.72804 4.87403 4.99563 5.15095 5.39715 5.57726 5.64462 6.01244 6.11555 6.57860 6.63276 6.96454 7.05496 7.16339 7.40532 7.58267 8.83404 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.011682 C = 0.011406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.480397 B = 2396.336816 C = 2454.241987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.033 0.967 9 C 0.264 3.736 10 H 0.031 0.969 11 N -0.841 5.841 12 C 0.071 3.929 13 N -0.471 5.471 14 C 0.009 3.991 15 C -0.135 4.135 16 C -0.166 4.166 17 C 0.151 3.849 18 N -0.862 5.862 19 H 0.268 0.732 20 H 0.342 0.658 21 H 0.321 0.679 22 H 0.165 0.835 23 H 0.166 0.834 24 H 0.159 0.841 25 H 0.400 0.600 26 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -8.367 3.526 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.051 0.949 9 C 0.153 3.847 10 H 0.049 0.951 11 N -0.369 5.369 12 C -0.074 4.074 13 N -0.180 5.180 14 C -0.149 4.149 15 C -0.155 4.155 16 C -0.196 4.196 17 C 0.042 3.958 18 N -0.403 5.403 19 H 0.077 0.923 20 H 0.156 0.844 21 H 0.130 0.870 22 H 0.182 0.818 23 H 0.184 0.816 24 H 0.176 0.824 25 H 0.230 0.770 26 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.067 -8.504 3.041 10.356 hybrid contribution 0.626 1.667 0.766 1.939 sum 5.692 -6.837 3.807 9.677 Atomic orbital electron populations 1.69823 1.06600 1.27923 1.51014 1.25653 0.95788 1.01957 0.94203 0.85586 0.78511 0.79513 0.78117 1.20417 1.20112 1.20252 1.21882 0.92688 0.92552 1.51610 0.94873 1.17587 0.88253 0.87985 0.90912 0.95137 1.59353 1.18197 1.54834 1.04516 1.21281 0.99445 0.98032 0.88605 1.67172 1.06265 1.16097 1.28476 1.22927 0.98134 0.93801 1.00087 1.22141 1.00115 1.00815 0.92392 1.21316 0.99081 0.98487 1.00747 1.18858 0.93707 0.94696 0.88517 1.42447 1.48614 1.39846 1.09439 0.92258 0.84356 0.86991 0.81750 0.81603 0.82358 0.76997 0.76295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.85 11.54 21.45 0.25 -50.60 15 2 C 0.02 1.32 5.38 84.65 0.46 1.78 15 3 Si 0.96 44.10 29.54 68.60 2.03 46.13 15 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 15 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 7 C -0.55 -30.88 8.71 25.60 0.22 -30.65 15 8 H 0.03 1.96 7.74 -2.91 -0.02 1.94 15 9 C 0.26 13.79 2.88 43.42 0.12 13.91 15 10 H 0.03 1.66 5.90 -2.39 -0.01 1.64 15 11 N -0.84 -43.87 9.14 -174.95 -1.60 -45.47 15 12 C 0.07 3.31 5.68 42.72 0.24 3.55 15 13 N -0.47 -21.30 9.70 -183.35 -1.78 -23.08 15 14 C 0.01 0.32 11.18 84.70 0.95 1.26 15 15 C -0.13 -3.86 10.10 22.34 0.23 -3.64 15 16 C -0.17 -5.04 10.05 22.59 0.23 -4.81 15 17 C 0.15 5.80 6.76 38.30 0.26 6.05 15 18 N -0.86 -28.40 9.01 -51.11 -0.46 -28.86 15 19 H 0.27 14.15 8.31 -92.71 -0.77 13.38 15 20 H 0.34 18.61 7.08 -89.70 -0.63 17.98 15 21 H 0.32 16.88 8.54 -89.69 -0.77 16.11 15 22 H 0.17 4.69 8.06 -2.91 -0.02 4.67 15 23 H 0.17 3.19 8.06 -2.91 -0.02 3.17 15 24 H 0.16 3.50 8.06 -2.91 -0.02 3.48 15 25 H 0.40 14.66 6.58 -92.71 -0.61 14.05 15 26 H 0.41 9.89 8.86 -92.70 -0.82 9.07 15 Total: -1.00 -64.06 228.16 -0.45 -64.51 By element: Atomic # 1 Polarization: 51.52 SS G_CDS: -1.59 Total: 49.93 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 2.70 Total: -12.55 kcal Atomic # 7 Polarization: -144.42 SS G_CDS: -3.59 Total: -148.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.06 -0.45 -64.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104670571.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.910 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds