Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 11 11 N 1.46899 * 109.47365 * 300.00347 * 9 7 2 12 12 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.38876 * 120.33743 * 260.00445 * 12 9 7 14 14 C 1.38297 * 118.50918 * 179.97438 * 13 12 9 15 15 C 1.39136 * 119.09245 * 0.02562 * 14 13 12 16 16 N 1.39006 * 119.70456 * 179.97438 * 15 14 13 17 17 N 1.32399 * 120.59305 * 359.97438 * 15 14 13 18 18 C 1.31973 * 121.61685 * 359.75514 * 17 15 14 19 19 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 20 20 H 1.00903 * 110.99644 * 176.04275 * 11 9 7 21 21 H 1.00897 * 110.99782 * 299.99792 * 11 9 7 22 22 H 1.08002 * 120.74954 * 0.02628 * 13 12 9 23 23 H 1.07996 * 120.45418 * 179.97438 * 14 13 12 24 24 H 0.97000 * 120.00168 * 359.97438 * 16 15 14 25 25 H 0.97003 * 119.99944 * 179.97438 * 16 15 14 26 26 H 1.08005 * 119.57033 * 180.28340 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8751 -0.6805 0.8889 11 7 4.0007 -0.5013 -1.2005 12 6 4.0138 -2.6149 -0.0023 13 6 4.4443 -3.2077 1.1776 14 6 4.8973 -4.5136 1.1332 15 6 4.9069 -5.1853 -0.0853 16 7 5.3601 -6.4980 -0.1447 17 7 4.4882 -4.5853 -1.1888 18 6 4.0459 -3.3420 -1.1750 19 1 -0.4850 0.8401 0.0004 20 1 5.0073 -0.4312 -1.1923 21 1 3.6769 -0.9586 -2.0396 22 1 4.4249 -2.6615 2.1091 23 1 5.2397 -5.0051 2.0318 24 1 5.6682 -6.9417 0.6611 25 1 5.3683 -6.9705 -0.9918 26 1 3.7079 -2.8863 -2.0941 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104672619.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = 35.531825 kcal Electronic energy + Delta-G solvation = -11632.192321 eV Core-core repulsion = 9517.466314 eV Total energy + Delta-G solvation = -2114.726006 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.71697 -35.69775 -33.47952 -31.88359 -31.57331 -28.28548 -26.18307 -23.33305 -22.50439 -20.17575 -17.22961 -17.05924 -16.61126 -15.09460 -14.91352 -14.20492 -13.92583 -13.72789 -13.65722 -12.56081 -12.38647 -11.81640 -11.66835 -10.85995 -10.59819 -10.12173 -9.76206 -9.35702 -9.12536 -8.93309 -8.51238 -7.70721 -7.23954 -5.99254 -4.09796 1.78006 2.04525 3.58420 3.62867 3.75750 3.82572 4.45587 4.66524 5.09908 5.25878 5.46525 5.63282 5.77728 5.93404 6.04038 6.18811 6.53290 6.78890 7.07291 7.15300 7.56146 7.63850 7.73922 8.15388 8.32596 8.66238 8.70338 9.01181 9.63768 11.10189 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.067460 B = 0.009959 C = 0.009754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.961496 B = 2810.971083 C = 2869.976600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.081 3.919 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.320 1.320 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.226 3.774 10 H 0.049 0.951 11 N -0.841 5.841 12 C -0.170 4.170 13 C -0.037 4.037 14 C -0.239 4.239 15 C 0.375 3.625 16 N -0.863 5.863 17 N -0.546 5.546 18 C 0.141 3.859 19 H 0.263 0.737 20 H 0.311 0.689 21 H 0.334 0.666 22 H 0.129 0.871 23 H 0.121 0.879 24 H 0.402 0.598 25 H 0.398 0.602 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -7.614 0.909 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.123 4.123 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.249 1.249 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.116 3.884 10 H 0.067 0.933 11 N -0.370 5.370 12 C -0.176 4.176 13 C -0.063 4.063 14 C -0.264 4.264 15 C 0.139 3.861 16 N -0.408 5.408 17 N -0.263 5.263 18 C -0.015 4.015 19 H 0.073 0.927 20 H 0.122 0.878 21 H 0.148 0.852 22 H 0.147 0.853 23 H 0.139 0.861 24 H 0.230 0.770 25 H 0.226 0.774 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.412 -7.279 0.388 12.710 hybrid contribution 0.843 -0.083 0.585 1.029 sum 11.255 -7.362 0.972 13.484 Atomic orbital electron populations 1.69967 1.06843 1.27353 1.49538 1.25042 0.94599 1.00129 0.92549 0.85837 0.78329 0.80699 0.78065 1.20605 1.24948 1.19995 1.20796 0.87378 0.94495 1.52917 0.91198 1.18541 0.96185 0.83405 0.90289 0.93341 1.59371 1.13008 1.58502 1.06155 1.21885 1.00576 1.01678 0.93497 1.21255 0.93235 0.93448 0.98401 1.21230 1.11192 0.96947 0.97037 1.18272 0.91941 0.86198 0.89670 1.42034 1.74304 1.11423 1.13074 1.67105 1.17557 1.12462 1.29192 1.22140 0.93246 0.87927 0.98195 0.92722 0.87768 0.85211 0.85334 0.86150 0.76960 0.77403 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 15 2 C 0.08 2.34 5.47 -17.82 -0.10 2.24 15 3 Si 0.94 23.71 26.03 -169.99 -4.42 19.29 15 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 5 H -0.32 -8.19 7.11 56.52 0.40 -7.79 15 6 H -0.27 -6.70 6.54 56.52 0.37 -6.33 15 7 C -0.52 -14.38 9.29 -34.44 -0.32 -14.70 15 8 H 0.07 2.16 7.98 -52.48 -0.42 1.74 15 9 C 0.23 5.13 2.36 -70.01 -0.16 4.97 15 10 H 0.05 1.14 7.09 -51.93 -0.37 0.77 15 11 N -0.84 -17.31 6.60 -6.65 -0.04 -17.35 15 12 C -0.17 -3.44 4.90 -104.46 -0.51 -3.96 15 13 C -0.04 -0.66 9.81 -39.32 -0.39 -1.05 15 14 C -0.24 -3.83 9.94 -39.23 -0.39 -4.22 15 15 C 0.38 6.19 7.75 -155.02 -1.20 4.99 15 16 N -0.86 -10.31 9.07 31.13 0.28 -10.03 15 17 N -0.55 -10.21 10.39 -12.44 -0.13 -10.34 15 18 C 0.14 2.76 10.45 -17.57 -0.18 2.58 15 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 20 H 0.31 5.52 9.06 -39.29 -0.36 5.16 15 21 H 0.33 6.56 7.36 -39.29 -0.29 6.27 15 22 H 0.13 2.12 8.06 -52.49 -0.42 1.70 15 23 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 24 H 0.40 3.57 8.82 -40.82 -0.36 3.21 15 25 H 0.40 4.32 8.95 -40.82 -0.37 3.95 15 26 H 0.15 2.78 6.67 -52.48 -0.35 2.43 15 LS Contribution 227.12 15.07 3.42 3.42 Total: -1.00 -32.35 227.12 -5.89 -38.24 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -2.52 Total: 12.86 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -3.25 Total: -9.16 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.88 Total: -64.66 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.42 Total: 19.29 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -32.35 -5.89 -38.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104672619.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.774 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds