Wall clock time and date at job start Mon Mar 30 2020 02:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99712 * 2 1 4 4 H 1.48506 * 109.47030 * 239.99221 * 3 2 1 5 5 H 1.48495 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46903 * 120.00114 * 3 2 1 7 7 C 1.37875 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00450 * 359.97438 * 7 2 1 10 10 H 1.09011 * 109.46752 * 60.00215 * 9 7 2 11 11 N 1.46905 * 109.47492 * 300.00765 * 9 7 2 12 12 C 1.50696 * 109.47704 * 180.02562 * 9 7 2 13 13 C 1.38270 * 119.54007 * 124.98060 * 12 9 7 14 14 C 1.38491 * 119.24255 * 180.02562 * 13 12 9 15 15 C 1.39309 * 118.36202 * 0.02562 * 14 13 12 16 16 N 1.39700 * 120.49471 * 179.97438 * 15 14 13 17 17 C 1.38896 * 119.01022 * 0.02562 * 15 14 13 18 18 N 1.31815 * 120.65794 * 359.97438 * 17 15 14 19 19 H 0.96999 * 119.99780 * 0.02562 * 1 2 3 20 20 H 1.00898 * 110.99765 * 299.99589 * 11 9 7 21 21 H 1.00908 * 110.99785 * 63.94547 * 11 9 7 22 22 H 1.08002 * 120.37739 * 0.02562 * 13 12 9 23 23 H 1.08008 * 120.82009 * 180.02562 * 14 13 12 24 24 H 0.97004 * 120.00303 * 359.97438 * 16 15 14 25 25 H 0.97003 * 119.99914 * 180.02562 * 16 15 14 26 26 H 1.08001 * 119.66736 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 7 0.4068 -2.5773 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.1491 -4.6110 0.9851 14 6 3.0524 -5.6607 0.9795 15 6 4.0147 -5.7003 -0.0271 16 7 4.9481 -6.7386 -0.0750 17 6 4.0328 -4.6916 -0.9817 18 7 3.1539 -3.7102 -0.9393 19 1 -0.4850 0.8401 -0.0004 20 1 0.9651 -2.5261 2.0381 21 1 -0.3005 -1.8577 1.1910 22 1 1.3898 -4.5478 1.7506 23 1 3.0119 -6.4296 1.7369 24 1 4.9296 -7.4388 0.5961 25 1 5.6152 -6.7589 -0.7789 26 1 4.7744 -4.7117 -1.7666 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104673328.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:21 Heat of formation + Delta-G solvation = 32.171662 kcal Electronic energy + Delta-G solvation = -11603.360282 eV Core-core repulsion = 9488.488568 eV Total energy + Delta-G solvation = -2114.871714 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.46133 -35.37844 -33.75124 -31.58889 -30.73516 -28.05873 -25.77635 -23.06170 -22.67651 -20.21853 -16.95308 -16.56386 -16.31719 -15.43436 -14.66105 -14.25728 -13.80417 -13.38493 -12.67383 -12.40028 -12.34946 -11.52341 -11.27315 -10.89773 -10.69752 -10.43828 -9.85309 -9.74357 -8.87745 -8.59501 -8.44575 -7.24277 -6.99962 -5.97988 -4.10394 2.01169 2.17729 3.32827 3.36742 3.41468 4.11043 4.41952 4.73649 5.19474 5.32328 5.43178 5.62010 5.84297 6.29314 6.49360 6.50281 6.84897 6.98208 7.31242 7.65542 7.78634 7.88734 7.94555 8.20175 8.69863 8.99868 9.10245 9.16342 9.58517 11.01105 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.057518 B = 0.010104 C = 0.009067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.686915 B = 2770.629198 C = 3087.540695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.256 3.744 10 H 0.055 0.945 11 N -0.851 5.851 12 C 0.119 3.881 13 C -0.119 4.119 14 C -0.164 4.164 15 C 0.130 3.870 16 N -0.883 5.883 17 C 0.022 3.978 18 N -0.437 5.437 19 H 0.264 0.736 20 H 0.312 0.688 21 H 0.359 0.641 22 H 0.142 0.858 23 H 0.119 0.881 24 H 0.392 0.608 25 H 0.394 0.606 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -9.759 1.897 11.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.146 3.854 10 H 0.073 0.927 11 N -0.382 5.382 12 C -0.021 4.021 13 C -0.139 4.139 14 C -0.194 4.194 15 C 0.026 3.974 16 N -0.424 5.424 17 C -0.141 4.141 18 N -0.145 5.145 19 H 0.074 0.926 20 H 0.121 0.879 21 H 0.176 0.824 22 H 0.160 0.840 23 H 0.137 0.863 24 H 0.219 0.781 25 H 0.221 0.779 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.823 -9.642 0.968 11.305 hybrid contribution 1.216 0.905 0.788 1.708 sum 7.039 -8.737 1.756 11.356 Atomic orbital electron populations 1.69729 1.05765 1.27096 1.51424 1.25010 0.94952 0.99242 0.94773 0.86553 0.79491 0.82659 0.78656 1.20179 1.21345 1.20435 1.21733 0.93698 0.90702 1.50334 0.92491 1.17704 0.88496 0.87711 0.91521 0.92725 1.59479 1.18564 1.56112 1.04014 1.21738 0.94363 0.96005 0.89947 1.21929 0.98414 0.93420 1.00176 1.20986 0.97694 1.01145 0.99625 1.18800 0.91560 0.90639 0.96382 1.42186 1.36745 1.28016 1.35454 1.22198 1.00695 0.91993 0.99167 1.67334 1.02073 1.20976 1.24120 0.92588 0.87912 0.82426 0.84025 0.86304 0.78076 0.77874 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 11.54 55.43 0.64 -24.71 15 2 C 0.06 1.71 5.38 -17.82 -0.10 1.61 15 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.52 -14.78 8.52 -34.44 -0.29 -15.08 15 8 H 0.06 1.66 7.68 -52.49 -0.40 1.26 15 9 C 0.26 6.69 3.19 -70.02 -0.22 6.46 15 10 H 0.06 1.59 8.14 -51.92 -0.42 1.17 15 11 N -0.85 -20.22 7.94 -6.65 -0.05 -20.28 15 12 C 0.12 2.79 6.11 -82.57 -0.50 2.29 15 13 C -0.12 -2.35 9.19 -39.48 -0.36 -2.72 15 14 C -0.16 -2.75 10.05 -39.09 -0.39 -3.14 15 15 C 0.13 2.10 6.79 -83.63 -0.57 1.53 15 16 N -0.88 -9.98 9.10 32.49 0.30 -9.68 15 17 C 0.02 0.41 11.06 -17.32 -0.19 0.22 15 18 N -0.44 -10.04 9.95 -9.30 -0.09 -10.13 15 19 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 20 H 0.31 7.03 8.26 -39.29 -0.32 6.71 15 21 H 0.36 9.12 7.08 -39.29 -0.28 8.84 15 22 H 0.14 2.67 6.63 -52.49 -0.35 2.32 15 23 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15 24 H 0.39 3.58 8.86 -40.82 -0.36 3.22 15 25 H 0.39 3.64 8.85 -40.82 -0.36 3.28 15 26 H 0.14 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 229.59 15.07 3.46 3.46 Total: -1.00 -30.10 229.59 -5.88 -35.98 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -2.48 Total: 17.42 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.63 Total: -8.81 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.79 Total: -64.80 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.10 -5.88 -35.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104673328.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.153 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds