Wall clock time and date at job start Mon Mar 30 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47042 * 240.00072 * 3 2 1 5 5 H 1.48498 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46994 * 120.00041 * 3 2 1 7 7 C 1.38810 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99934 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.38158 * 120.02768 * 259.99936 * 11 10 9 13 13 C 1.38250 * 120.05410 * 180.02562 * 12 11 10 14 14 C 1.38281 * 120.11168 * 359.97438 * 13 12 11 15 15 C 1.38125 * 120.05855 * 359.97438 * 14 13 12 16 16 C 1.38711 * 120.02445 * 79.95997 * 11 10 9 17 17 O 1.35901 * 120.05828 * 0.03985 * 16 11 10 18 18 H 0.97006 * 119.99760 * 359.97438 * 1 2 3 19 19 H 0.96992 * 120.00126 * 0.02562 * 9 7 2 20 20 H 1.09000 * 109.46904 * 60.00187 * 10 9 7 21 21 H 1.09002 * 109.47269 * 300.00154 * 10 9 7 22 22 H 1.08004 * 119.97750 * 359.97438 * 12 11 10 23 23 H 1.07999 * 119.94133 * 179.97438 * 13 12 11 24 24 H 1.07997 * 119.97275 * 180.02562 * 14 13 12 25 25 H 1.07994 * 120.03307 * 179.73079 * 15 14 13 26 26 H 0.96701 * 113.99785 * 269.95941 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0786 -4.8022 0.0001 12 6 0.7876 -5.4624 1.1783 13 6 -0.1103 -6.5136 1.1795 14 6 -0.7198 -6.9066 0.0021 15 6 -0.4331 -6.2491 -1.1783 16 6 0.4679 -5.1940 -1.1822 17 8 0.7525 -4.5461 -2.3424 18 1 -0.4850 0.8401 0.0004 19 1 0.3555 -2.3880 -0.0005 20 1 2.6846 -3.7146 0.8895 21 1 2.6846 -3.7146 -0.8905 22 1 1.2626 -5.1577 2.0992 23 1 -0.3361 -7.0287 2.1015 24 1 -1.4212 -7.7278 0.0056 25 1 -0.9061 -6.5592 -2.0984 26 1 0.1737 -3.7932 -2.5247 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126191003.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:28 Heat of formation + Delta-G solvation = -32.086720 kcal Electronic energy + Delta-G solvation = -11519.635693 eV Core-core repulsion = 9369.684775 eV Total energy + Delta-G solvation = -2149.950918 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.72989 -37.46006 -36.57314 -33.76196 -31.51713 -30.55837 -27.20491 -24.66719 -23.44502 -22.16288 -19.35837 -19.09018 -16.99525 -16.75864 -16.65776 -16.01034 -15.33148 -15.03631 -14.71542 -14.09655 -13.64550 -13.21522 -12.96448 -12.77015 -12.75154 -12.31292 -12.13131 -11.86934 -11.22474 -10.98632 -9.79216 -9.47931 -9.04250 -7.96870 -5.26824 0.34455 0.42520 1.47351 1.50539 1.56779 2.54198 2.74680 3.36269 3.45007 3.93606 4.00640 4.18072 4.25523 4.45843 4.62528 4.81956 4.91495 5.01726 5.13333 5.45837 5.47674 5.57228 5.70595 5.98022 6.23796 6.81544 7.30903 8.01643 8.29671 9.26150 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.062125 B = 0.008873 C = 0.008556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.594643 B = 3154.722617 C = 3271.750736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.733 5.733 10 C 0.195 3.805 11 C -0.134 4.134 12 C -0.104 4.104 13 C -0.130 4.130 14 C -0.102 4.102 15 C -0.155 4.155 16 C 0.098 3.902 17 O -0.510 6.510 18 H 0.253 0.747 19 H 0.373 0.627 20 H 0.028 0.972 21 H 0.022 0.978 22 H 0.128 0.872 23 H 0.155 0.845 24 H 0.161 0.839 25 H 0.144 0.856 26 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -12.819 0.392 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.069 3.931 11 C -0.135 4.135 12 C -0.122 4.122 13 C -0.148 4.148 14 C -0.120 4.120 15 C -0.173 4.173 16 C 0.053 3.947 17 O -0.321 6.321 18 H 0.061 0.939 19 H 0.205 0.795 20 H 0.046 0.954 21 H 0.040 0.960 22 H 0.146 0.854 23 H 0.173 0.827 24 H 0.178 0.822 25 H 0.162 0.838 26 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.946 -13.125 0.334 13.164 hybrid contribution -0.184 1.570 -0.093 1.584 sum -1.131 -11.555 0.240 11.613 Atomic orbital electron populations 1.69812 1.06596 1.26295 1.59192 1.25556 0.96414 1.00997 1.03283 0.85174 0.77209 0.78921 0.78208 1.20413 1.21900 1.20355 1.19605 0.91501 0.85206 1.41879 0.90835 1.42419 1.05338 1.00346 1.89473 1.19535 0.92411 0.83248 0.97933 1.20528 1.00670 0.98265 0.94042 1.21212 0.98360 0.95954 0.96717 1.21494 0.96607 0.96883 0.99802 1.21417 0.99423 0.99872 0.91302 1.21657 0.98093 0.97140 1.00451 1.18666 0.96290 0.94769 0.84951 1.84656 1.61314 1.48385 1.37794 0.93852 0.79496 0.95429 0.96001 0.85359 0.82740 0.82177 0.83819 0.74360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.46 13.06 21.65 0.28 -59.18 15 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 15 3 Si 0.98 46.48 29.55 68.60 2.03 48.50 15 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 15 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 15 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 15 9 N -0.73 -38.75 5.59 -347.16 -1.94 -40.69 15 10 C 0.19 8.65 6.05 85.63 0.52 9.16 15 11 C -0.13 -5.05 5.26 -19.77 -0.10 -5.15 15 12 C -0.10 -3.27 9.66 22.25 0.22 -3.06 15 13 C -0.13 -3.19 10.04 22.28 0.22 -2.97 15 14 C -0.10 -2.35 10.04 22.25 0.22 -2.13 15 15 C -0.16 -4.30 9.99 22.37 0.22 -4.08 15 16 C 0.10 3.45 6.68 22.51 0.15 3.60 15 17 O -0.51 -18.68 12.74 -92.44 -1.18 -19.85 15 18 H 0.25 15.00 8.31 -92.70 -0.77 14.23 15 19 H 0.37 20.83 7.66 -92.71 -0.71 20.12 15 20 H 0.03 1.20 8.00 -2.39 -0.02 1.19 15 21 H 0.02 1.02 7.86 -2.39 -0.02 1.00 15 22 H 0.13 3.81 8.04 -2.91 -0.02 3.79 15 23 H 0.15 2.70 8.06 -2.91 -0.02 2.67 15 24 H 0.16 2.42 8.06 -2.91 -0.02 2.40 15 25 H 0.14 3.30 8.06 -2.91 -0.02 3.28 15 26 H 0.40 13.25 9.06 -74.06 -0.67 12.58 15 Total: -1.00 -66.72 236.41 1.76 -64.96 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.19 Total: 28.00 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 2.76 Total: -21.74 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -1.66 Total: -99.88 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.18 Total: -19.85 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -66.72 1.76 -64.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126191003.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.876 kcal (2) G-P(sol) polarization free energy of solvation -66.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds