Wall clock time and date at job start Mon Mar 30 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38674 * 120.78680 * 2 1 4 4 C 1.38176 * 119.16239 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76706 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72448 * 359.67891 * 5 4 3 7 7 C 1.38226 * 120.75913 * 0.58738 * 6 5 4 8 8 C 1.50696 * 120.41931 * 179.72988 * 7 6 5 9 9 H 1.08999 * 109.47358 * 144.71768 * 8 7 6 10 10 O 1.42903 * 109.47131 * 24.71408 * 8 7 6 11 11 C 1.50707 * 109.47163 * 264.72211 * 8 7 6 12 12 H 1.07995 * 119.99310 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99931 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00169 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99871 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46796 * 60.00023 * 15 13 11 17 17 H 1.48494 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47022 * 300.00169 * 15 13 11 19 19 H 1.08999 * 109.46829 * 269.97550 * 1 2 3 20 20 H 1.08998 * 109.47539 * 29.97620 * 1 2 3 21 21 H 1.08997 * 109.47044 * 149.97711 * 1 2 3 22 22 H 1.08004 * 120.41903 * 0.02562 * 3 2 1 23 23 H 1.08005 * 119.62033 * 180.02562 * 4 3 2 24 24 H 1.07998 * 119.61961 * 180.29110 * 6 5 4 25 25 H 0.96700 * 114.00311 * 300.00591 * 10 8 7 26 26 H 0.96998 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 -0.0005 5 7 4.2403 0.0003 -0.0016 6 6 3.5984 -1.1515 0.0042 7 6 2.2167 -1.1908 -0.0006 8 6 1.4909 -2.5115 -0.0001 9 1 0.5786 -2.4245 0.5900 10 8 2.3321 -3.5171 0.5685 11 6 1.1394 -2.8921 -1.4154 12 1 1.4138 -2.2423 -2.2332 13 6 0.4676 -4.0697 -1.6659 14 7 0.1340 -4.8612 -0.6699 15 14 0.0314 -4.5411 -3.4200 16 1 1.2740 -4.6588 -4.2245 17 1 -0.6837 -5.8426 -3.4196 18 1 -0.8434 -3.4964 -4.0103 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 1.6966 2.1378 0.0004 23 1 4.1583 2.0755 -0.0001 24 1 4.1586 -2.0748 0.0079 25 1 3.1640 -3.6488 0.0935 26 1 -0.3390 -5.6895 -0.8462 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135558855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:09 Heat of formation + Delta-G solvation = -27.187932 kcal Electronic energy + Delta-G solvation = -11853.110912 eV Core-core repulsion = 9703.372422 eV Total energy + Delta-G solvation = -2149.738490 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.68446 -35.81796 -33.34771 -32.24478 -30.58227 -27.37597 -26.71100 -23.63119 -21.65112 -20.57189 -17.12084 -16.04814 -15.93788 -15.04312 -14.64614 -13.91812 -13.65628 -12.94989 -12.76778 -12.29673 -12.06008 -11.85898 -11.45434 -11.12638 -10.99063 -10.89979 -10.28879 -9.58680 -8.95861 -8.78175 -8.74171 -8.39361 -8.01849 -6.11342 -4.31601 1.77230 1.92115 3.23852 3.29428 3.31898 4.28317 4.46776 5.01294 5.13542 5.28531 5.45856 5.62210 5.78498 6.00874 6.10618 6.20009 6.23836 6.43659 6.59539 6.71539 7.01909 7.37372 7.57106 7.72773 8.00410 8.56297 8.71361 9.21478 9.44683 10.91708 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.045564 B = 0.011963 C = 0.011309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.370817 B = 2340.029761 C = 2475.327457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.179 4.179 4 C 0.067 3.933 5 N -0.494 5.494 6 C 0.092 3.908 7 C -0.120 4.120 8 C 0.264 3.736 9 H 0.073 0.927 10 O -0.560 6.560 11 C -0.565 4.565 12 H 0.057 0.943 13 C 0.082 3.918 14 N -0.857 5.857 15 Si 0.893 3.107 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 H 0.067 0.933 20 H 0.059 0.941 21 H 0.094 0.906 22 H 0.123 0.877 23 H 0.143 0.857 24 H 0.150 0.850 25 H 0.347 0.653 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 7.928 0.303 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.090 4.090 5 N -0.203 5.203 6 C -0.064 4.064 7 C -0.122 4.122 8 C 0.206 3.794 9 H 0.091 0.909 10 O -0.363 6.363 11 C -0.603 4.603 12 H 0.075 0.925 13 C -0.125 4.125 14 N -0.492 5.492 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 H 0.086 0.914 20 H 0.078 0.922 21 H 0.113 0.887 22 H 0.141 0.859 23 H 0.161 0.839 24 H 0.167 0.833 25 H 0.192 0.808 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.736 7.713 0.798 7.946 hybrid contribution -0.737 -0.113 -1.449 1.629 sum 0.998 7.600 -0.651 7.692 Atomic orbital electron populations 1.20862 0.90644 1.03924 1.02193 1.20147 0.96862 0.92277 0.95969 1.21907 0.95605 0.98218 1.04195 1.22441 0.91704 0.95946 0.98874 1.67570 1.41457 0.98582 1.12719 1.22452 0.91816 0.95553 0.96569 1.22298 0.95542 0.99006 0.95347 1.18466 0.88315 0.78265 0.94401 0.90949 1.86622 1.32836 1.60366 1.56506 1.21423 1.40134 1.06668 0.92059 0.92523 1.25035 0.94403 0.96021 0.97067 1.70057 1.36882 1.11468 1.30770 0.86668 0.78811 0.77823 0.84758 1.20017 1.21050 1.20053 0.91433 0.92210 0.88738 0.85881 0.83933 0.83254 0.80809 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.31 36.01 0.34 -1.72 15 2 C -0.04 -0.85 5.92 -104.32 -0.62 -1.47 15 3 C -0.18 -2.97 9.82 -39.44 -0.39 -3.36 15 4 C 0.07 1.13 11.18 -17.55 -0.20 0.94 15 5 N -0.49 -9.60 10.36 -13.25 -0.14 -9.73 15 6 C 0.09 1.88 10.47 -17.54 -0.18 1.70 15 7 C -0.12 -2.58 5.02 -104.49 -0.52 -3.11 15 8 C 0.26 6.50 2.41 -29.03 -0.07 6.43 15 9 H 0.07 1.92 7.10 -51.93 -0.37 1.55 15 10 O -0.56 -14.06 12.38 -35.23 -0.44 -14.50 15 11 C -0.57 -14.93 8.07 -34.44 -0.28 -15.21 15 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 13 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 14 N -0.86 -24.34 12.84 55.43 0.71 -23.63 15 15 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 15 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 19 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 20 H 0.06 0.86 8.10 -51.93 -0.42 0.44 15 21 H 0.09 1.86 6.36 -51.93 -0.33 1.53 15 22 H 0.12 1.63 8.06 -52.48 -0.42 1.20 15 23 H 0.14 1.89 8.06 -52.48 -0.42 1.47 15 24 H 0.15 2.82 6.42 -52.49 -0.34 2.49 15 25 H 0.35 7.64 7.35 45.56 0.33 7.97 15 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 LS Contribution 229.67 15.07 3.46 3.46 Total: -1.00 -29.87 229.67 -5.37 -35.24 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -1.93 Total: 7.25 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.02 Total: -13.69 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.57 Total: -33.36 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.44 Total: -14.50 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.87 -5.37 -35.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135558855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.052 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds