Wall clock time and date at job start Mon Mar 30 2020 02:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42892 * 109.47214 * 2 1 4 4 C 1.35582 * 116.99949 * 180.02562 * 3 2 1 5 5 C 1.38989 * 120.58726 * 359.97438 * 4 3 2 6 6 C 1.38592 * 118.53831 * 179.97438 * 5 4 3 7 7 C 1.38955 * 119.65961 * 359.97438 * 6 5 4 8 8 N 1.31342 * 121.18701 * 0.02562 * 7 6 5 9 9 C 1.33694 * 121.57041 * 359.97438 * 8 7 6 10 10 C 1.41042 * 119.89112 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99880 * 179.97438 * 10 9 8 12 12 C 1.40056 * 119.99803 * 359.97438 * 10 9 8 13 13 N 1.30756 * 120.00268 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99723 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47338 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.47211 * 119.99711 * 14 12 10 17 17 H 1.48499 * 109.47576 * 239.99847 * 14 12 10 18 18 H 1.09005 * 109.47318 * 59.99943 * 1 2 3 19 19 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47375 * 299.99987 * 1 2 3 21 21 H 1.09002 * 109.46688 * 239.99721 * 2 1 3 22 22 H 1.09000 * 109.46880 * 119.99900 * 2 1 3 23 23 H 1.07998 * 120.72934 * 359.95384 * 5 4 3 24 24 H 1.07997 * 120.17335 * 179.97438 * 6 5 4 25 25 H 1.07994 * 119.40796 * 179.72195 * 7 6 5 26 26 H 0.96998 * 120.00217 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3504 1.5248 -0.0005 5 6 4.2083 0.4313 -0.0005 6 6 5.5749 0.6618 -0.0016 7 6 6.0521 1.9669 -0.0033 8 7 5.2304 2.9915 -0.0033 9 6 3.9038 2.8249 -0.0022 10 6 3.0540 3.9505 -0.0028 11 1 1.9822 3.8180 -0.0024 12 6 3.6002 5.2402 -0.0040 13 7 4.8979 5.4007 -0.0040 14 14 2.4747 6.7311 -0.0055 15 1 1.0590 6.2826 -0.0046 16 1 2.7349 7.5491 1.2064 17 1 2.7352 7.5469 -1.2186 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8932 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.8186 -0.5759 0.0007 24 1 6.2655 -0.1685 -0.0012 25 1 7.1177 2.1419 0.0004 26 1 5.2761 6.2939 -0.0044 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140322382.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:22 Heat of formation + Delta-G solvation = -10.946872 kcal Electronic energy + Delta-G solvation = -11729.713781 eV Core-core repulsion = 9580.679556 eV Total energy + Delta-G solvation = -2149.034225 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84046 -36.68985 -33.57189 -31.30104 -30.28953 -28.82880 -25.51042 -23.32265 -21.16355 -20.83806 -17.45319 -16.79656 -15.63326 -15.26021 -14.59558 -14.30618 -13.10455 -12.77619 -12.69105 -12.31585 -12.06561 -11.61480 -11.21467 -11.15254 -11.11749 -10.53573 -10.41007 -10.06037 -9.70944 -9.36758 -8.09011 -7.63912 -7.14683 -6.38308 -4.35875 2.75645 2.99295 3.13207 3.19227 3.21560 3.99946 4.29694 4.79160 5.37628 5.51915 5.71228 5.89620 5.91299 6.04366 6.21254 6.22770 6.26936 6.41872 6.84406 6.91164 7.22439 7.47501 7.62788 7.98418 8.27603 8.35116 8.75221 9.07148 10.11556 10.35174 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.031002 B = 0.014753 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.962839 B = 1897.478118 C = 2779.994196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.308 6.308 4 C -0.032 4.032 5 C -0.148 4.148 6 C -0.295 4.295 7 C 0.097 3.903 8 N -0.467 5.467 9 C 0.250 3.750 10 C -0.414 4.414 11 H 0.090 0.910 12 C 0.065 3.935 13 N -0.717 5.717 14 Si 0.909 3.091 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.273 1.273 18 H 0.062 0.938 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 -4.528 0.003 6.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.221 6.221 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.319 4.319 7 C -0.066 4.066 8 N -0.182 5.182 9 C 0.123 3.877 10 C -0.446 4.446 11 H 0.109 0.891 12 C -0.159 4.159 13 N -0.339 5.339 14 Si 0.733 3.267 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.198 1.198 18 H 0.081 0.919 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.154 -3.372 0.003 5.350 hybrid contribution -0.518 -0.679 0.001 0.854 sum -4.672 -4.051 0.004 6.184 Atomic orbital electron populations 1.21719 0.94064 1.01564 1.03135 1.22450 0.94753 0.84817 0.99914 1.85941 1.20293 1.25659 1.90239 1.20236 0.81334 0.95455 1.11047 1.20917 0.94384 0.96072 1.05829 1.21073 0.94248 0.97283 1.19276 1.22458 0.98731 0.88893 0.96499 1.68896 1.01574 1.29946 1.17789 1.18267 0.89134 0.88395 0.91905 1.19599 0.94502 0.89206 1.41262 0.89148 1.26105 0.95327 1.00712 0.93788 1.70158 1.11538 1.23351 1.28829 0.86250 0.81343 0.80647 0.78487 1.18281 1.19849 1.19845 0.91890 0.91531 0.91897 0.93624 0.93626 0.88224 0.88819 0.86284 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 37.16 0.38 -1.69 15 2 C 0.06 1.01 5.48 37.16 0.20 1.22 15 3 O -0.31 -7.25 9.26 -18.44 -0.17 -7.42 15 4 C -0.03 -0.84 6.73 -38.14 -0.26 -1.10 15 5 C -0.15 -3.48 9.13 -39.17 -0.36 -3.83 15 6 C -0.30 -6.90 10.11 -39.19 -0.40 -7.30 15 7 C 0.10 2.45 11.18 -17.50 -0.20 2.25 15 8 N -0.47 -13.38 7.86 -11.00 -0.09 -13.46 15 9 C 0.25 7.17 6.56 -84.83 -0.56 6.61 15 10 C -0.41 -11.61 8.95 -37.84 -0.34 -11.95 15 11 H 0.09 2.46 7.32 -52.49 -0.38 2.07 15 12 C 0.07 1.72 5.50 -17.33 -0.10 1.62 15 13 N -0.72 -19.55 11.46 55.55 0.64 -18.91 15 14 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 15 15 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 17 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.05 0.77 7.70 -51.93 -0.40 0.37 15 22 H 0.05 0.77 7.70 -51.93 -0.40 0.37 15 23 H 0.10 2.02 6.44 -52.49 -0.34 1.69 15 24 H 0.09 1.90 8.06 -52.49 -0.42 1.48 15 25 H 0.12 2.65 8.06 -52.49 -0.42 2.22 15 26 H 0.27 6.66 8.29 -40.82 -0.34 6.32 15 LS Contribution 231.37 15.07 3.49 3.49 Total: -1.00 -30.50 231.37 -5.54 -36.04 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.77 Total: 0.30 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.61 Total: -14.16 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.55 Total: -32.38 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.17 Total: -7.42 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.50 -5.54 -36.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140322382.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.089 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds