Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38216 * 119.61908 * 2 1 4 4 C 1.38630 * 119.16339 * 179.97438 * 3 2 1 5 5 C 1.38672 * 118.41833 * 359.97438 * 4 3 2 6 6 C 1.38186 * 119.16323 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.61516 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47358 * 4.99880 * 7 6 5 9 9 O 1.42903 * 109.47131 * 244.99521 * 7 6 5 10 10 C 1.50707 * 109.47163 * 125.00323 * 7 6 5 11 11 H 1.07995 * 119.99310 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99931 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99867 * 179.97438 * 12 10 7 14 14 Si 1.86795 * 120.00226 * 359.97438 * 12 10 7 15 15 H 1.48500 * 109.47385 * 90.00022 * 14 12 10 16 16 H 1.48504 * 109.47165 * 209.99884 * 14 12 10 17 17 H 1.48500 * 109.47346 * 330.00169 * 14 12 10 18 18 N 1.31859 * 119.61472 * 180.24725 * 2 1 3 19 19 H 1.09008 * 109.46872 * 89.99929 * 1 2 3 20 20 H 1.08996 * 109.47030 * 209.99620 * 1 2 3 21 21 H 1.08997 * 109.46892 * 330.00430 * 1 2 3 22 22 H 1.08003 * 120.42443 * 359.97438 * 3 2 1 23 23 H 1.08000 * 120.79265 * 179.97438 * 4 3 2 24 24 H 1.08003 * 120.41994 * 179.97438 * 5 4 3 25 25 H 0.96700 * 114.00311 * 300.00591 * 9 7 6 26 26 H 0.97000 * 120.00088 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2267 -0.0343 0.0016 6 6 3.4766 -1.1949 0.0016 7 6 4.1727 -2.5314 0.0021 8 1 5.2485 -2.3808 0.0921 9 8 3.8881 -3.2172 -1.2189 10 6 3.6814 -3.3532 1.1660 11 1 2.9396 -2.9479 1.8381 12 6 4.1789 -4.6224 1.3725 13 7 3.7505 -5.3393 2.3884 14 14 5.4613 -5.3236 0.2094 15 1 6.8188 -4.9799 0.7038 16 1 5.3170 -6.8002 0.1454 17 1 5.2679 -4.7482 -1.1459 18 7 2.1587 -1.1463 -0.0049 19 1 -0.3633 0.0000 -1.0278 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6509 2.1373 -0.0004 23 1 4.1367 2.1138 0.0001 24 1 5.3057 -0.0806 0.0016 25 1 2.9472 -3.3856 -1.3654 26 1 4.1002 -6.2324 2.5335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141937659.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -17.983698 kcal Electronic energy + Delta-G solvation = -11716.489986 eV Core-core repulsion = 9567.150621 eV Total energy + Delta-G solvation = -2149.339365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.75144 -35.94586 -32.57073 -32.21441 -31.71612 -28.14742 -26.64090 -23.55634 -21.68086 -20.64595 -17.31574 -16.11893 -15.80196 -15.14340 -14.75593 -14.01967 -13.65338 -13.23159 -12.83611 -12.54763 -12.11872 -11.99973 -11.74629 -11.53053 -10.96731 -10.50670 -10.26418 -9.30480 -9.13808 -8.96594 -8.60245 -8.31427 -8.16721 -6.08163 -4.17882 1.63456 1.80408 3.40075 3.49899 3.75599 4.31188 4.55560 4.78418 5.08294 5.23576 5.33316 5.44561 5.64521 5.82293 5.84384 5.90453 5.99757 6.20268 6.34351 6.54708 6.62635 7.12577 7.28601 7.53932 8.34409 8.72335 8.85434 9.05010 9.53924 11.02484 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.051417 B = 0.011518 C = 0.010596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.435512 B = 2430.432215 C = 2641.966470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.121 3.879 3 C -0.197 4.197 4 C -0.078 4.078 5 C -0.183 4.183 6 C 0.149 3.851 7 C 0.238 3.762 8 H 0.070 0.930 9 O -0.575 6.575 10 C -0.545 4.545 11 H 0.076 0.924 12 C 0.082 3.918 13 N -0.891 5.891 14 Si 0.868 3.132 15 H -0.286 1.286 16 H -0.294 1.294 17 H -0.218 1.218 18 N -0.462 5.462 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.364 0.636 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 11.143 -5.586 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.018 4.018 3 C -0.217 4.217 4 C -0.104 4.104 5 C -0.203 4.203 6 C 0.011 3.989 7 C 0.180 3.820 8 H 0.087 0.913 9 O -0.381 6.381 10 C -0.582 4.582 11 H 0.095 0.905 12 C -0.122 4.122 13 N -0.528 5.528 14 Si 0.694 3.306 15 H -0.213 1.213 16 H -0.220 1.220 17 H -0.140 1.140 18 N -0.172 5.172 19 H 0.090 0.910 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.142 0.858 23 H 0.144 0.856 24 H 0.147 0.853 25 H 0.212 0.788 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.845 10.232 -5.576 11.798 hybrid contribution 0.583 0.443 -0.121 0.742 sum -1.262 10.675 -5.697 12.166 Atomic orbital electron populations 1.20660 0.89543 1.03092 1.02477 1.21340 0.96850 0.88662 0.94912 1.21766 0.94938 0.98809 1.06147 1.21441 0.94445 0.97875 0.96678 1.22025 1.01310 0.93137 1.03805 1.22531 0.89307 0.97350 0.89729 1.18870 0.94303 0.83894 0.84973 0.91253 1.86654 1.29724 1.78750 1.42991 1.21341 1.25726 1.00050 1.11096 0.90543 1.24980 0.96018 0.96514 0.94677 1.69950 1.42979 1.10900 1.28995 0.87075 0.80598 0.77758 0.85137 1.21299 1.22034 1.14048 1.67421 1.09970 1.28273 1.11546 0.90951 0.90387 0.91377 0.85814 0.85646 0.85289 0.78806 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.17 36.01 0.37 -1.00 15 2 C 0.12 2.13 6.78 -82.58 -0.56 1.57 15 3 C -0.20 -3.00 9.74 -39.44 -0.38 -3.38 15 4 C -0.08 -1.21 10.18 -39.28 -0.40 -1.61 15 5 C -0.18 -3.35 9.71 -39.44 -0.38 -3.73 15 6 C 0.15 3.27 5.72 -82.59 -0.47 2.80 15 7 C 0.24 5.81 2.64 -29.03 -0.08 5.73 15 8 H 0.07 1.65 7.30 -51.93 -0.38 1.27 15 9 O -0.58 -13.75 10.13 -35.23 -0.36 -14.11 15 10 C -0.54 -15.64 9.14 -34.44 -0.31 -15.96 15 11 H 0.08 2.44 7.93 -52.49 -0.42 2.02 15 12 C 0.08 2.41 5.47 -17.82 -0.10 2.31 15 13 N -0.89 -27.61 13.96 55.43 0.77 -26.84 15 14 Si 0.87 21.83 26.99 -169.99 -4.59 17.24 15 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 16 H -0.29 -7.42 7.11 56.52 0.40 -7.02 15 17 H -0.22 -5.36 5.30 56.52 0.30 -5.06 15 18 N -0.46 -9.97 9.86 -5.74 -0.06 -10.03 15 19 H 0.07 0.87 8.14 -51.92 -0.42 0.44 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.72 15 21 H 0.07 0.74 8.08 -51.93 -0.42 0.32 15 22 H 0.12 1.45 8.06 -52.48 -0.42 1.03 15 23 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 24 H 0.13 2.09 7.95 -52.48 -0.42 1.67 15 25 H 0.36 8.17 9.01 45.56 0.41 8.58 15 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 230.98 15.07 3.48 3.48 Total: -1.00 -32.62 230.98 -5.22 -37.84 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.15 Total: 5.69 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.32 Total: -13.27 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.72 Total: -36.87 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.36 Total: -14.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.24 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.62 -5.22 -37.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141937659.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.852 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds