Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35701 * 117.00059 * 2 1 4 4 C 1.38428 * 120.13510 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.24945 * 179.97438 * 4 3 2 6 6 C 1.39521 * 120.51525 * 359.97438 * 5 4 3 7 7 N 1.39843 * 119.87101 * 180.02562 * 6 5 4 8 8 C 1.38069 * 120.25863 * 359.78552 * 6 5 4 9 9 C 1.40659 * 119.74355 * 0.46908 * 8 6 5 10 10 C 1.41135 * 120.25142 * 179.78716 * 9 8 6 11 11 H 1.08001 * 120.00348 * 149.59119 * 10 9 8 12 12 C 1.39905 * 119.99915 * 329.86759 * 10 9 8 13 13 N 1.30878 * 119.99964 * 161.86969 * 12 10 9 14 14 Si 1.86798 * 119.99983 * 341.86738 * 12 10 9 15 15 H 1.48503 * 109.47344 * 95.39768 * 14 12 10 16 16 H 1.48498 * 109.47362 * 215.39890 * 14 12 10 17 17 H 1.48500 * 109.47236 * 335.39897 * 14 12 10 18 18 H 1.09000 * 109.46723 * 60.00134 * 1 2 3 19 19 H 1.09000 * 109.47721 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47019 * 300.00647 * 1 2 3 21 21 H 1.07997 * 119.87253 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.74516 * 180.02562 * 5 4 3 23 23 H 0.96997 * 119.99880 * 0.02562 * 7 6 5 24 24 H 0.97003 * 119.99683 * 180.02562 * 7 6 5 25 25 H 1.07992 * 120.12930 * 180.25667 * 8 6 5 26 26 H 0.97005 * 120.00171 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2939 2.3718 0.0005 5 6 1.9188 3.6043 0.0011 6 6 3.3112 3.6927 0.0016 7 7 3.9296 4.9470 0.0027 8 6 4.0811 2.5465 0.0061 9 6 3.4564 1.2863 0.0001 10 6 4.2329 0.1077 0.0001 11 1 3.8546 -0.7883 0.4695 12 6 5.4953 0.1018 -0.6030 13 7 6.3555 -0.8403 -0.3112 14 14 5.9529 1.4386 -1.8249 15 1 6.6937 2.5178 -1.1236 16 1 6.8103 0.8620 -2.8914 17 1 4.7184 1.9989 -2.4310 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.2154 2.3155 0.0005 22 1 1.3248 4.5063 0.0019 23 1 3.3905 5.7534 0.0034 24 1 4.8975 5.0105 0.0027 25 1 5.1586 2.6173 0.0107 26 1 7.2307 -0.8447 -0.7296 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165536718.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = -42.718566 kcal Electronic energy + Delta-G solvation = -11861.116937 eV Core-core repulsion = 9710.704988 eV Total energy + Delta-G solvation = -2150.411949 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47464 -38.28760 -35.81584 -34.18027 -32.22616 -29.05103 -27.82973 -26.64341 -23.21399 -21.94153 -19.44293 -18.57395 -17.71614 -17.10812 -16.31058 -16.16716 -15.80192 -15.28724 -14.74448 -13.94562 -13.86834 -13.49512 -13.18439 -12.74796 -12.48376 -12.41636 -12.17809 -11.67295 -11.42122 -10.95392 -10.37673 -9.50564 -8.84266 -7.93043 -6.35050 0.80181 1.05355 1.26409 1.46201 1.52202 2.17290 2.67630 2.97359 3.32372 3.56978 4.26147 4.43976 4.54458 4.57962 4.76796 4.80600 5.08056 5.18003 5.29704 5.64331 5.72753 5.85857 6.17994 6.27980 6.52119 6.84289 6.85957 7.25262 7.29819 8.25256 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.019122 C = 0.012363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.652006 B = 1463.914626 C = 2264.258901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C -0.033 4.033 4 C -0.131 4.131 5 C -0.266 4.266 6 C 0.216 3.784 7 N -0.876 5.876 8 C -0.298 4.298 9 C 0.084 3.916 10 C -0.469 4.469 11 H 0.050 0.950 12 C 0.043 3.957 13 N -0.855 5.855 14 Si 0.976 3.024 15 H -0.255 1.255 16 H -0.281 1.281 17 H -0.259 1.259 18 H 0.055 0.945 19 H 0.105 0.895 20 H 0.054 0.946 21 H 0.135 0.865 22 H 0.131 0.869 23 H 0.404 0.596 24 H 0.396 0.604 25 H 0.102 0.898 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 9.045 -1.735 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.289 4.289 6 C 0.113 3.887 7 N -0.418 5.418 8 C -0.322 4.322 9 C 0.081 3.919 10 C -0.499 4.499 11 H 0.068 0.932 12 C -0.170 4.170 13 N -0.483 5.483 14 Si 0.799 3.201 15 H -0.180 1.180 16 H -0.208 1.208 17 H -0.183 1.183 18 H 0.073 0.927 19 H 0.124 0.876 20 H 0.073 0.927 21 H 0.153 0.847 22 H 0.149 0.851 23 H 0.234 0.766 24 H 0.224 0.776 25 H 0.119 0.881 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.920 8.625 -1.729 10.603 hybrid contribution 0.402 0.255 -0.233 0.530 sum -5.518 8.881 -1.962 10.638 Atomic orbital electron populations 1.23084 0.78669 1.04039 1.01153 1.85951 1.21476 1.28015 1.90682 1.19228 0.91839 0.84289 1.12476 1.20846 0.99168 0.91454 1.03590 1.20103 0.91731 0.97167 1.19936 1.17567 0.92125 0.85668 0.93389 1.42251 1.09068 1.03941 1.86534 1.20281 0.97724 0.91152 1.23090 1.17124 0.89817 0.92929 0.92057 1.19207 0.99770 0.97479 1.33396 0.93201 1.26864 0.94332 0.98334 0.97479 1.69762 1.06681 1.34094 1.37730 0.85338 0.78815 0.78015 0.77916 1.18014 1.20791 1.18265 0.92679 0.87633 0.92741 0.84705 0.85077 0.76598 0.77609 0.88069 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.81 113.37 1.11 1.94 15 2 O -0.35 -16.55 9.84 -90.21 -0.89 -17.44 15 3 C -0.03 -1.64 6.72 23.08 0.16 -1.49 15 4 C -0.13 -5.39 9.02 22.30 0.20 -5.19 15 5 C -0.27 -10.27 9.89 22.57 0.22 -10.05 15 6 C 0.22 8.86 6.74 38.13 0.26 9.12 15 7 N -0.88 -26.73 9.09 -51.40 -0.47 -27.20 15 8 C -0.30 -14.58 6.99 22.82 0.16 -14.42 15 9 C 0.08 4.60 5.11 -21.21 -0.11 4.50 15 10 C -0.47 -28.34 9.18 23.39 0.21 -28.13 15 11 H 0.05 3.32 7.90 -2.91 -0.02 3.30 15 12 C 0.04 2.43 5.40 85.24 0.46 2.89 15 13 N -0.86 -49.37 13.93 21.82 0.30 -49.06 15 14 Si 0.98 45.13 24.52 68.60 1.68 46.81 15 15 H -0.25 -10.82 6.71 99.48 0.67 -10.15 15 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 17 H -0.26 -12.39 6.87 99.48 0.68 -11.70 15 18 H 0.05 1.60 7.66 -2.39 -0.02 1.58 15 19 H 0.11 2.85 8.14 -2.39 -0.02 2.83 15 20 H 0.05 1.58 7.66 -2.39 -0.02 1.56 15 21 H 0.14 4.51 6.28 -2.91 -0.02 4.49 15 22 H 0.13 4.07 8.06 -2.91 -0.02 4.05 15 23 H 0.40 9.51 8.84 -92.71 -0.82 8.69 15 24 H 0.40 11.12 8.84 -92.71 -0.82 10.30 15 25 H 0.10 4.91 4.76 -2.91 -0.01 4.90 15 26 H 0.29 15.05 8.30 -92.70 -0.77 14.29 15 Total: -1.00 -67.87 223.37 2.82 -65.05 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.48 Total: 22.65 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.68 Total: -40.81 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -0.16 Total: -76.26 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.89 Total: -17.44 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.68 Total: 46.81 kcal Total: -67.87 2.82 -65.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165536718.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.330 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds