Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36584 * 119.32194 * 2 1 4 4 C 1.41059 * 119.04612 * 180.27360 * 3 2 1 5 5 C 1.41210 * 121.06735 * 179.75283 * 4 3 2 6 6 H 1.07994 * 119.99924 * 204.82727 * 5 4 3 7 7 C 1.40055 * 119.99749 * 24.82625 * 5 4 3 8 8 N 1.30769 * 119.99814 * 202.10625 * 7 5 4 9 9 Si 1.86797 * 120.00519 * 22.10320 * 7 5 4 10 10 H 1.48499 * 109.47148 * 263.25547 * 9 7 5 11 11 H 1.48501 * 109.46820 * 23.25311 * 9 7 5 12 12 H 1.48499 * 109.47250 * 143.25288 * 9 7 5 13 13 C 1.41668 * 117.86188 * 359.47727 * 4 3 2 14 14 O 1.35642 * 120.71087 * 180.27243 * 13 4 3 15 15 C 1.38587 * 118.57225 * 0.25225 * 13 4 3 16 16 C 1.50701 * 119.62210 * 179.97438 * 15 13 4 17 17 N 1.31875 * 120.74958 * 0.02562 * 15 13 4 18 18 H 1.08999 * 109.47279 * 270.26015 * 1 2 3 19 19 H 1.09002 * 109.46694 * 30.26314 * 1 2 3 20 20 H 1.08996 * 109.46706 * 150.25795 * 1 2 3 21 21 H 1.07992 * 120.47474 * 0.03010 * 3 2 1 22 22 H 0.96998 * 119.99585 * 353.05389 * 8 7 5 23 23 H 0.96696 * 114.00424 * 90.00689 * 14 13 4 24 24 H 1.08995 * 109.47007 * 90.00474 * 16 15 13 25 25 H 1.09001 * 109.46703 * 210.00217 * 16 15 13 26 26 H 1.09000 * 109.46982 * 329.99659 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1759 1.1908 0.0000 4 6 3.5864 1.1841 -0.0059 5 6 4.3210 2.3901 -0.0113 6 1 5.3251 2.4090 -0.4083 7 6 3.7471 3.5618 0.4980 8 7 4.2031 4.7290 0.1245 9 14 2.3303 3.4572 1.7109 10 1 1.0443 3.6094 0.9841 11 1 2.3598 2.1389 2.3940 12 1 2.4605 4.5400 2.7188 13 6 4.2425 -0.0715 -0.0001 14 8 5.5969 -0.1454 0.0002 15 6 3.4708 -1.2226 0.0056 16 6 4.1441 -2.5708 0.0112 17 7 2.1539 -1.1515 0.0051 18 1 -0.3634 0.0047 1.0276 19 1 -0.3633 0.8877 -0.5179 20 1 -0.3632 -0.8923 -0.5098 21 1 1.6326 2.1242 0.0005 22 1 5.0008 4.7850 -0.4246 23 1 5.9897 -0.1629 0.8836 24 1 4.3070 -2.8913 1.0401 25 1 3.5098 -3.2958 -0.4990 26 1 5.1022 -2.5006 -0.5037 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213824988.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = -60.220793 kcal Electronic energy + Delta-G solvation = -11913.851109 eV Core-core repulsion = 9762.680206 eV Total energy + Delta-G solvation = -2151.170903 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.95194 -37.84459 -36.24663 -33.93496 -32.79057 -29.64315 -27.40808 -26.86464 -22.79900 -22.10456 -20.03683 -19.01199 -17.60851 -16.62755 -15.91811 -15.57194 -15.19540 -14.85564 -14.28690 -14.04829 -13.91101 -13.12780 -13.02589 -12.96869 -12.72422 -12.48266 -12.05720 -11.77520 -11.50550 -11.23129 -10.25275 -9.90296 -9.46438 -9.22002 -6.83188 0.47547 0.68625 1.31836 1.50928 1.71137 2.08538 2.51883 3.23437 3.59026 3.81478 4.12812 4.41332 4.54486 4.74194 4.80348 4.88045 4.91801 4.98570 5.09020 5.26825 5.37848 5.39758 5.50099 5.91017 6.16153 6.28312 6.56073 7.11071 7.53088 7.78865 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.017354 C = 0.012532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.539789 B = 1613.082548 C = 2233.752410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.132 3.868 3 C -0.300 4.300 4 C 0.074 3.926 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.816 5.816 9 Si 1.105 2.895 10 H -0.250 1.250 11 H -0.267 1.267 12 H -0.273 1.273 13 C -0.087 4.087 14 O -0.493 6.493 15 C 0.118 3.882 16 C -0.085 4.085 17 N -0.566 5.566 18 H 0.086 0.914 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.116 0.884 22 H 0.283 0.717 23 H 0.376 0.624 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 -6.418 3.370 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.001 4.001 3 C -0.322 4.322 4 C 0.066 3.934 5 C -0.551 4.551 6 H 0.071 0.929 7 C -0.201 4.201 8 N -0.439 5.439 9 Si 0.924 3.076 10 H -0.175 1.175 11 H -0.192 1.192 12 H -0.199 1.199 13 C -0.136 4.136 14 O -0.300 6.300 15 C -0.018 4.018 16 C -0.142 4.142 17 N -0.284 5.284 18 H 0.104 0.896 19 H 0.098 0.902 20 H 0.099 0.901 21 H 0.134 0.866 22 H 0.094 0.906 23 H 0.230 0.770 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.804 -6.186 3.508 9.179 hybrid contribution 2.463 0.406 -0.738 2.603 sum -3.341 -5.779 2.770 7.227 Atomic orbital electron populations 1.20708 0.87361 1.03538 1.03550 1.21010 0.97895 0.88063 0.93135 1.21555 0.93713 0.98803 1.18081 1.18563 0.92949 0.93406 0.88485 1.20509 1.02206 0.94768 1.37628 0.92874 1.28504 1.03903 0.90479 0.97203 1.70557 1.19188 1.27209 1.26909 0.83200 0.72987 0.76940 0.74426 1.17477 1.19210 1.19919 1.19417 0.83708 0.92520 1.17934 1.84649 1.16449 1.95924 1.33020 1.21729 0.89789 0.95726 0.94532 1.20525 0.99631 0.90832 1.03201 1.67273 1.08706 1.28572 1.23866 0.89568 0.90227 0.90138 0.86628 0.90593 0.76987 0.89711 0.90467 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 10.15 71.24 0.72 -2.30 15 2 C 0.13 5.76 6.74 42.13 0.28 6.04 15 3 C -0.30 -14.45 6.92 22.57 0.16 -14.29 15 4 C 0.07 3.92 5.22 -21.01 -0.11 3.81 15 5 C -0.52 -29.10 9.16 23.44 0.21 -28.88 15 6 H 0.05 3.20 7.89 -2.91 -0.02 3.17 15 7 C 0.02 0.87 5.40 85.29 0.46 1.33 15 8 N -0.82 -43.82 13.65 21.85 0.30 -43.52 15 9 Si 1.10 47.09 24.91 68.60 1.71 48.80 15 10 H -0.25 -9.66 6.69 99.48 0.67 -9.00 15 11 H -0.27 -11.48 6.87 99.48 0.68 -10.79 15 12 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 13 C -0.09 -4.26 6.75 23.20 0.16 -4.11 15 14 O -0.49 -22.10 12.00 -89.57 -1.07 -23.17 15 15 C 0.12 5.21 6.80 42.64 0.29 5.50 15 16 C -0.08 -2.82 9.96 71.24 0.71 -2.11 15 17 N -0.57 -25.26 10.14 -172.84 -1.75 -27.02 15 18 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 19 H 0.08 2.30 8.07 -2.39 -0.02 2.28 15 20 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.12 5.34 4.50 -2.91 -0.01 5.32 15 22 H 0.28 15.10 8.73 -92.71 -0.81 14.29 15 23 H 0.38 13.53 9.06 -74.06 -0.67 12.86 15 24 H 0.08 2.44 8.14 -2.39 -0.02 2.43 15 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.07 2.39 7.53 -2.39 -0.02 2.37 15 Total: -1.00 -62.61 226.79 2.49 -60.12 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.42 Total: 19.81 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 2.88 Total: -35.02 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.46 Total: -70.54 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.07 Total: -23.17 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.71 Total: 48.80 kcal Total: -62.61 2.49 -60.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213824988.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.099 kcal (2) G-P(sol) polarization free energy of solvation -62.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds