Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 114.00048 * 2 1 4 4 C 1.50696 * 109.47471 * 180.02562 * 3 2 1 5 5 C 1.37750 * 120.56556 * 359.97438 * 4 3 2 6 6 N 1.32010 * 121.00649 * 180.02562 * 5 4 3 7 7 C 1.32045 * 122.32144 * 359.97438 * 6 5 4 8 8 C 1.37703 * 121.00728 * 359.71981 * 7 6 5 9 9 C 1.41030 * 120.57450 * 179.97438 * 4 3 2 10 10 C 1.41506 * 121.03128 * 359.97438 * 9 4 3 11 11 H 1.07998 * 119.99531 * 26.21835 * 10 9 4 12 12 C 1.40041 * 120.00266 * 206.21331 * 10 9 4 13 13 N 1.30740 * 119.99951 * 24.91758 * 12 10 9 14 14 Si 1.86791 * 120.00356 * 204.91898 * 12 10 9 15 15 H 1.48505 * 109.47440 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47458 * 300.00317 * 14 12 10 17 17 H 1.48505 * 109.46968 * 60.00040 * 14 12 10 18 18 H 1.09002 * 109.46800 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47200 * 300.00246 * 1 2 3 20 20 H 1.09005 * 109.46970 * 60.00085 * 1 2 3 21 21 H 1.09003 * 109.46954 * 59.99529 * 3 2 1 22 22 H 1.09005 * 109.46834 * 300.00127 * 3 2 1 23 23 H 1.08001 * 119.49469 * 0.04747 * 5 4 3 24 24 H 1.07998 * 119.49546 * 179.97438 * 7 6 5 25 25 H 1.08006 * 120.56145 * 180.30791 * 8 7 6 26 26 H 0.97006 * 120.00000 * 5.85003 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1173 -0.0512 -0.0006 6 7 5.4324 -0.1654 -0.0006 7 6 6.2324 0.8851 -0.0012 8 6 5.7231 2.1645 -0.0076 9 6 4.3235 2.3403 -0.0013 10 6 3.7509 3.6344 -0.0019 11 1 2.7651 3.7888 0.4113 12 6 4.4625 4.7147 -0.5382 13 7 5.3830 4.5066 -1.4430 14 14 4.0966 6.4531 0.0391 15 1 4.9791 7.4088 -0.6774 16 1 2.6768 6.7813 -0.2470 17 1 4.3426 6.5515 1.5003 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.6886 1.8464 0.8900 22 1 1.6886 1.8463 -0.8900 23 1 3.5061 -0.9416 -0.0008 24 1 7.3024 0.7387 -0.0008 25 1 6.3841 3.0186 -0.0131 26 1 5.5151 3.6163 -1.8047 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213825234.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -36.177880 kcal Electronic energy + Delta-G solvation = -11702.025983 eV Core-core repulsion = 9551.897659 eV Total energy + Delta-G solvation = -2150.128324 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.68887 -37.02497 -34.43434 -31.43223 -29.80410 -26.92378 -25.60218 -24.74090 -21.49912 -20.57596 -18.11603 -16.04590 -15.29936 -15.24556 -14.80510 -14.35141 -14.04644 -13.18680 -12.91942 -12.43186 -12.02783 -11.79830 -11.67170 -11.23655 -10.85126 -10.50300 -10.20124 -9.94290 -9.40073 -9.18604 -8.14573 -7.98877 -7.68352 -7.30499 -4.73463 2.59052 2.76061 3.08352 3.23833 3.29552 3.91075 4.31896 4.55403 5.39119 5.56124 5.60265 5.74843 5.84949 6.06127 6.23625 6.30845 6.40652 6.76288 6.82389 7.18637 7.20868 7.45862 7.64035 7.76696 7.94073 8.15180 8.49872 8.68301 9.53487 9.89995 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.013764 C = 0.010013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.239259 B = 2033.744434 C = 2795.557111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.140 3.860 4 C -0.256 4.256 5 C 0.133 3.867 6 N -0.584 5.584 7 C 0.101 3.899 8 C -0.267 4.267 9 C 0.120 3.880 10 C -0.515 4.515 11 H 0.079 0.921 12 C 0.041 3.959 13 N -0.786 5.786 14 Si 1.066 2.934 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.273 1.273 18 H 0.078 0.922 19 H 0.035 0.965 20 H 0.036 0.964 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.132 0.868 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 0.017 1.664 6.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.064 3.936 4 C -0.261 4.261 5 C -0.021 4.021 6 N -0.298 5.298 7 C -0.050 4.050 8 C -0.290 4.290 9 C 0.112 3.888 10 C -0.545 4.545 11 H 0.097 0.903 12 C -0.183 4.183 13 N -0.409 5.409 14 Si 0.889 3.111 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.198 1.198 18 H 0.097 0.903 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.149 0.851 24 H 0.139 0.861 25 H 0.131 0.869 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.750 0.566 1.450 4.999 hybrid contribution -1.057 -0.471 0.152 1.167 sum -5.807 0.096 1.602 6.025 Atomic orbital electron populations 1.22634 0.82237 1.01839 0.99551 1.87813 1.18551 1.29533 1.95391 1.20795 0.91334 0.82411 0.99064 1.20322 0.93193 0.94720 1.17880 1.21850 0.90443 0.95786 0.94033 1.67511 1.05022 1.33806 1.23506 1.22016 0.97910 0.89061 0.96016 1.21957 0.95602 0.97210 1.14224 1.17575 0.91260 0.92330 0.87620 1.20558 1.04777 0.92668 1.36480 0.90272 1.27091 0.91820 1.06519 0.92821 1.70421 1.25021 1.28836 1.16630 0.83621 0.77258 0.72919 0.77298 1.19672 1.20018 1.19834 0.90297 0.94590 0.94542 0.93890 0.93457 0.85087 0.86092 0.86933 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 15 2 O -0.39 -7.67 9.22 -35.23 -0.32 -8.00 15 3 C 0.14 3.00 5.24 36.00 0.19 3.19 15 4 C -0.26 -6.37 5.96 -103.75 -0.62 -6.99 15 5 C 0.13 3.27 10.53 -17.65 -0.19 3.08 15 6 N -0.58 -14.73 10.34 -13.42 -0.14 -14.87 15 7 C 0.10 2.48 11.16 -17.66 -0.20 2.28 15 8 C -0.27 -6.87 8.04 -38.71 -0.31 -7.19 15 9 C 0.12 3.16 5.31 -106.52 -0.57 2.59 15 10 C -0.52 -13.18 8.49 -37.66 -0.32 -13.50 15 11 H 0.08 1.94 7.24 -52.49 -0.38 1.56 15 12 C 0.04 1.01 4.99 -17.34 -0.09 0.92 15 13 N -0.79 -20.33 12.37 55.55 0.69 -19.65 15 14 Si 1.07 20.70 30.00 -169.99 -5.10 15.60 15 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 19 H 0.04 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.04 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.04 0.89 7.89 -51.93 -0.41 0.48 15 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.13 3.00 7.01 -52.49 -0.37 2.64 15 24 H 0.12 2.58 8.06 -52.49 -0.42 2.15 15 25 H 0.11 2.91 6.64 -52.48 -0.35 2.56 15 26 H 0.30 8.05 6.68 -40.82 -0.27 7.78 15 LS Contribution 230.07 15.07 3.47 3.47 Total: -1.00 -28.23 230.07 -5.08 -33.31 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.69 Total: 4.14 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.98 Total: -14.01 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.55 Total: -34.52 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.32 Total: -8.00 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.10 Total: 15.60 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.23 -5.08 -33.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213825234.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.869 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds