Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31048 * 1 3 3 Si 1.86806 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00691 * 3 2 1 5 5 H 1.48505 * 109.46520 * 30.00824 * 3 2 1 6 6 H 1.48494 * 109.46965 * 150.00272 * 3 2 1 7 7 C 1.39683 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.41342 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.47091 * 127.08332 * 0.02771 * 9 7 2 11 11 C 1.33688 * 106.48740 * 179.71795 * 10 9 7 12 12 N 1.37624 * 109.47442 * 0.28339 * 11 10 9 13 13 C 1.34487 * 110.17933 * 359.93575 * 12 11 10 14 14 C 1.47131 * 122.71059 * 179.87915 * 12 11 10 15 15 C 1.53352 * 108.13088 * 343.33743 * 14 12 11 16 16 O 1.42996 * 109.77776 * 49.12750 * 15 14 12 17 17 C 1.43425 * 113.98097 * 289.05415 * 16 15 14 18 18 H 0.97000 * 119.99833 * 359.97438 * 1 2 3 19 19 H 1.08002 * 126.75872 * 359.97438 * 10 9 7 20 20 H 1.08002 * 125.99118 * 180.09685 * 13 12 11 21 21 H 1.09009 * 109.73060 * 102.99154 * 14 12 11 22 22 H 1.08997 * 109.73319 * 223.62550 * 14 12 11 23 23 H 1.08998 * 109.42167 * 169.22226 * 15 14 12 24 24 H 1.08997 * 109.41498 * 289.10021 * 15 14 12 25 25 H 1.09007 * 109.80025 * 290.16660 * 17 16 15 26 26 H 1.09001 * 109.80980 * 169.29016 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4920 2.0466 -1.4000 5 1 1.4420 2.6526 0.7003 6 1 3.5421 1.4401 0.7000 7 6 2.0089 -1.2097 -0.0005 8 1 3.0889 -1.2097 -0.0010 9 6 1.3021 -2.4337 -0.0005 10 6 -0.1576 -2.6150 -0.0006 11 6 -0.3761 -3.9339 -0.0069 12 7 0.8290 -4.5986 -0.0044 13 6 1.8449 -3.7174 0.0021 14 6 0.9272 -6.0667 -0.0073 15 6 -0.4354 -6.6369 0.4048 16 8 -1.4712 -6.0169 -0.3616 17 6 -1.7100 -4.6453 -0.0169 18 1 -0.4850 0.8401 0.0004 19 1 -0.9056 -1.8360 -0.0002 20 1 2.8969 -3.9617 0.0039 21 1 1.1852 -6.4162 -1.0071 22 1 1.6904 -6.3858 0.7023 23 1 -0.4470 -7.7122 0.2269 24 1 -0.6039 -6.4429 1.4641 25 1 -2.1671 -4.5870 0.9709 26 1 -2.3671 -4.1877 -0.7564 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213825406.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = 2.869296 kcal Electronic energy + Delta-G solvation = -11853.638650 eV Core-core repulsion = 9705.203538 eV Total energy + Delta-G solvation = -2148.435111 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.83882 -36.90943 -33.42578 -31.90659 -29.23383 -27.63396 -25.86785 -23.40773 -22.11652 -19.26196 -17.68553 -17.04890 -15.80954 -15.50514 -14.81354 -14.47556 -14.03364 -13.44258 -12.80244 -12.59887 -11.85235 -11.43486 -11.14688 -10.85661 -10.79719 -10.71768 -10.58344 -9.86125 -9.66580 -9.09830 -9.08591 -6.94410 -6.66023 -6.26528 -3.84879 3.14740 3.25675 3.30048 3.65283 3.93526 4.22558 4.36068 4.48326 5.07029 5.33164 5.51356 5.69856 5.76091 5.79722 5.91134 6.09362 6.17387 6.63311 7.24014 7.39932 7.52269 7.74864 7.99237 8.38101 8.55692 8.95424 9.03316 9.37232 9.38359 10.70015 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.081337 B = 0.009981 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.164245 B = 2804.557618 C = 3108.744697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.442 4.442 8 H 0.065 0.935 9 C 0.036 3.964 10 C -0.172 4.172 11 C -0.075 4.075 12 N -0.459 5.459 13 C -0.168 4.168 14 C 0.084 3.916 15 C 0.055 3.945 16 O -0.388 6.388 17 C 0.141 3.859 18 H 0.268 0.732 19 H 0.156 0.844 20 H 0.130 0.870 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 -7.492 1.108 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.083 0.917 9 C 0.030 3.970 10 C -0.201 4.201 11 C -0.183 4.183 12 N -0.144 5.144 13 C -0.292 4.292 14 C -0.039 4.039 15 C -0.022 4.022 16 O -0.307 6.307 17 C 0.065 3.935 18 H 0.079 0.921 19 H 0.173 0.827 20 H 0.148 0.852 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.746 -7.771 0.968 8.023 hybrid contribution 0.777 0.898 0.185 1.202 sum -0.969 -6.873 1.152 7.036 Atomic orbital electron populations 1.69766 1.06989 1.27286 1.42178 1.25661 0.94761 1.00309 0.93568 0.86331 0.80041 0.81563 0.78618 1.20065 1.20719 1.19246 1.18703 0.93380 0.89403 1.46055 0.91654 1.18505 0.91180 0.90415 0.96923 1.22241 0.97330 0.91738 1.08782 1.20695 0.86437 0.93385 1.17755 1.42888 1.05416 1.02928 1.63196 1.21360 0.90524 0.88761 1.28599 1.22207 0.98390 0.81704 1.01639 1.22732 0.86682 0.97329 0.95472 1.87957 1.54702 1.26013 1.61984 1.21291 0.93157 0.78989 1.00092 0.92124 0.82712 0.85248 0.91681 0.90678 0.88282 0.92706 0.92741 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.10 10.42 55.54 0.58 -22.52 15 2 C 0.07 1.86 5.49 -17.35 -0.10 1.77 15 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 7 C -0.44 -12.75 9.40 -37.86 -0.36 -13.11 15 8 H 0.07 1.82 7.84 -52.49 -0.41 1.40 15 9 C 0.04 1.05 6.10 -104.70 -0.64 0.41 15 10 C -0.17 -4.71 9.80 -37.59 -0.37 -5.08 15 11 C -0.08 -1.80 6.63 -81.35 -0.54 -2.34 15 12 N -0.46 -10.67 3.12 -110.84 -0.35 -11.02 15 13 C -0.17 -4.35 11.55 -15.97 -0.18 -4.53 15 14 C 0.08 1.46 7.22 -3.52 -0.03 1.44 15 15 C 0.06 0.84 6.79 37.34 0.25 1.10 15 16 O -0.39 -7.05 10.78 -35.23 -0.38 -7.43 15 17 C 0.14 2.70 7.24 36.24 0.26 2.97 15 18 H 0.27 6.85 8.30 -40.82 -0.34 6.52 15 19 H 0.16 4.35 6.02 -52.49 -0.32 4.03 15 20 H 0.13 3.08 8.06 -52.49 -0.42 2.66 15 21 H 0.06 1.08 8.14 -51.92 -0.42 0.66 15 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.10 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.05 0.81 8.08 -51.93 -0.42 0.39 15 25 H 0.05 0.95 8.14 -51.92 -0.42 0.53 15 26 H 0.10 1.78 8.14 -51.93 -0.42 1.36 15 LS Contribution 224.45 15.07 3.38 3.38 Total: -1.00 -31.33 224.45 -6.30 -37.63 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.82 Total: 1.95 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.69 Total: -17.39 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.23 Total: -33.53 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.38 Total: -7.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.33 -6.30 -37.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213825406.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.499 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds