Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31048 * 1 3 3 Si 1.86806 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00691 * 3 2 1 5 5 H 1.48505 * 109.46520 * 30.00824 * 3 2 1 6 6 H 1.48494 * 109.46965 * 150.00272 * 3 2 1 7 7 C 1.39683 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.41342 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.47091 * 127.08332 * 0.02771 * 9 7 2 11 11 C 1.33688 * 106.48740 * 179.71795 * 10 9 7 12 12 N 1.37624 * 109.47442 * 0.28339 * 11 10 9 13 13 C 1.34487 * 110.17933 * 359.93575 * 12 11 10 14 14 C 1.47131 * 122.71059 * 179.87915 * 12 11 10 15 15 C 1.53352 * 108.13088 * 343.33743 * 14 12 11 16 16 O 1.42996 * 109.77776 * 49.12750 * 15 14 12 17 17 C 1.43425 * 113.98097 * 289.05415 * 16 15 14 18 18 H 0.97000 * 119.99833 * 359.97438 * 1 2 3 19 19 H 1.08002 * 126.75872 * 359.97438 * 10 9 7 20 20 H 1.08002 * 125.99118 * 180.09685 * 13 12 11 21 21 H 1.09009 * 109.73060 * 102.99154 * 14 12 11 22 22 H 1.08997 * 109.73319 * 223.62550 * 14 12 11 23 23 H 1.08998 * 109.42167 * 169.22226 * 15 14 12 24 24 H 1.08997 * 109.41498 * 289.10021 * 15 14 12 25 25 H 1.09007 * 109.80025 * 290.16660 * 17 16 15 26 26 H 1.09001 * 109.80980 * 169.29016 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4920 2.0466 -1.4000 5 1 1.4420 2.6526 0.7003 6 1 3.5421 1.4401 0.7000 7 6 2.0089 -1.2097 -0.0005 8 1 3.0889 -1.2097 -0.0010 9 6 1.3021 -2.4337 -0.0005 10 6 -0.1576 -2.6150 -0.0006 11 6 -0.3761 -3.9339 -0.0069 12 7 0.8290 -4.5986 -0.0044 13 6 1.8449 -3.7174 0.0021 14 6 0.9272 -6.0667 -0.0073 15 6 -0.4354 -6.6369 0.4048 16 8 -1.4712 -6.0169 -0.3616 17 6 -1.7100 -4.6453 -0.0169 18 1 -0.4850 0.8401 0.0004 19 1 -0.9056 -1.8360 -0.0002 20 1 2.8969 -3.9617 0.0039 21 1 1.1852 -6.4162 -1.0071 22 1 1.6904 -6.3858 0.7023 23 1 -0.4470 -7.7122 0.2269 24 1 -0.6039 -6.4429 1.4641 25 1 -2.1671 -4.5870 0.9709 26 1 -2.3671 -4.1877 -0.7564 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213825406.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = -17.727541 kcal Electronic energy + Delta-G solvation = -11854.531796 eV Core-core repulsion = 9705.203538 eV Total energy + Delta-G solvation = -2149.328257 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.58107 -38.45930 -35.38873 -33.54072 -31.09569 -29.31546 -27.68723 -25.23509 -23.60764 -21.24041 -19.40583 -18.88129 -17.58385 -16.99442 -16.51407 -16.12889 -15.61007 -15.02512 -14.54506 -14.27635 -13.49420 -13.26113 -12.93775 -12.76695 -12.60041 -12.33625 -12.07794 -11.71201 -11.45334 -11.07532 -10.74331 -8.95150 -8.60008 -8.28651 -5.96040 1.35434 1.41520 1.55120 1.77242 2.31630 2.38688 2.44397 2.96461 3.64019 3.74701 4.07375 4.12046 4.27784 4.47001 4.51048 4.73549 4.77999 4.80943 5.36189 5.41708 5.64350 5.95657 6.04524 6.31622 6.55194 6.94637 7.11793 7.28636 7.34588 8.68765 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.081337 B = 0.009981 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.164245 B = 2804.557618 C = 3108.744697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.020 3.980 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.483 4.483 8 H 0.061 0.939 9 C -0.014 4.014 10 C -0.220 4.220 11 C -0.064 4.064 12 N -0.458 5.458 13 C -0.174 4.174 14 C 0.072 3.928 15 C 0.053 3.947 16 O -0.394 6.394 17 C 0.146 3.854 18 H 0.274 0.726 19 H 0.137 0.863 20 H 0.144 0.856 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.147 0.853 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -8.820 1.313 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.517 4.517 8 H 0.079 0.921 9 C -0.020 4.020 10 C -0.249 4.249 11 C -0.174 4.174 12 N -0.141 5.141 13 C -0.300 4.300 14 C -0.049 4.049 15 C -0.024 4.024 16 O -0.312 6.312 17 C 0.069 3.931 18 H 0.084 0.916 19 H 0.155 0.845 20 H 0.162 0.838 21 H 0.095 0.905 22 H 0.120 0.880 23 H 0.164 0.836 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.783 -9.151 1.173 9.396 hybrid contribution 0.793 1.141 0.123 1.395 sum -0.990 -8.009 1.296 8.174 Atomic orbital electron populations 1.69889 1.08342 1.28468 1.42224 1.26570 0.95766 1.03783 0.92719 0.85174 0.78622 0.76616 0.78900 1.19309 1.19524 1.18791 1.19009 0.93442 0.90914 1.48290 0.92100 1.19014 0.92465 0.91775 0.98775 1.22123 0.96672 0.93298 1.12776 1.21266 0.88709 0.92900 1.14499 1.43266 1.04443 1.05389 1.61030 1.21576 0.91773 0.88799 1.27853 1.22710 1.01000 0.77880 1.03348 1.23056 0.84373 0.99411 0.95517 1.87962 1.55567 1.24894 1.62761 1.21358 0.90522 0.79387 1.01784 0.91582 0.84510 0.83840 0.90486 0.88015 0.83581 0.92010 0.90552 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.25 10.42 21.79 0.23 -49.02 15 2 C 0.02 1.11 5.49 85.16 0.47 1.58 15 3 Si 0.98 42.64 29.56 68.60 2.03 44.67 15 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 7 C -0.48 -28.97 9.40 23.38 0.22 -28.75 15 8 H 0.06 3.52 7.84 -2.91 -0.02 3.50 15 9 C -0.01 -0.81 6.10 -19.92 -0.12 -0.93 15 10 C -0.22 -12.45 9.80 23.56 0.23 -12.22 15 11 C -0.06 -3.02 6.63 40.77 0.27 -2.75 15 12 N -0.46 -20.75 3.12 -504.58 -1.58 -22.33 15 13 C -0.17 -9.08 11.55 84.56 0.98 -8.10 15 14 C 0.07 2.26 7.22 86.38 0.62 2.88 15 15 C 0.05 1.39 6.79 72.10 0.49 1.88 15 16 O -0.39 -12.91 10.78 -148.98 -1.61 -14.52 15 17 C 0.15 5.30 7.24 71.39 0.52 5.82 15 18 H 0.27 14.35 8.30 -92.71 -0.77 13.58 15 19 H 0.14 8.08 6.02 -2.91 -0.02 8.06 15 20 H 0.14 6.84 8.06 -2.91 -0.02 6.81 15 21 H 0.08 2.29 8.14 -2.38 -0.02 2.27 15 22 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.15 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.06 1.57 8.08 -2.39 -0.02 1.55 15 25 H 0.08 2.47 8.14 -2.38 -0.02 2.45 15 26 H 0.11 3.78 8.14 -2.39 -0.02 3.76 15 Total: -1.00 -69.87 224.45 3.92 -65.95 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.17 Total: 15.84 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 3.67 Total: -40.60 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.35 Total: -71.35 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.61 Total: -14.52 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -69.87 3.92 -65.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213825406.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.226 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds