Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31095 * 1 3 3 Si 1.86801 * 120.00330 * 2 1 4 4 H 1.48498 * 109.46855 * 239.99999 * 3 2 1 5 5 H 1.48493 * 109.46930 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46646 * 119.99939 * 3 2 1 7 7 C 1.39606 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.41304 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.46969 * 127.03101 * 0.24920 * 9 7 2 11 11 C 1.34435 * 106.61091 * 180.09989 * 10 9 7 12 12 N 1.37648 * 109.39170 * 359.77200 * 11 10 9 13 13 C 1.35445 * 110.04692 * 0.06348 * 12 11 10 14 14 C 1.47135 * 123.18178 * 179.97438 * 12 11 10 15 15 C 1.53435 * 108.01935 * 342.80266 * 14 12 11 16 16 C 1.53209 * 109.30578 * 47.79383 * 15 14 12 17 17 O 1.36285 * 127.30347 * 180.02562 * 11 10 9 18 18 H 0.97003 * 119.99916 * 0.02562 * 1 2 3 19 19 H 1.08000 * 126.69340 * 359.97438 * 10 9 7 20 20 H 1.08004 * 125.99838 * 180.11468 * 13 12 11 21 21 H 1.09007 * 109.74603 * 223.17611 * 14 12 11 22 22 H 1.08994 * 109.79706 * 102.46315 * 14 12 11 23 23 H 1.09003 * 109.49535 * 287.84748 * 15 14 12 24 24 H 1.08995 * 109.52895 * 167.76264 * 15 14 12 25 25 H 1.08998 * 109.50731 * 174.90754 * 16 15 14 26 26 H 1.08997 * 109.54895 * 54.78450 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 3.0988 1.6962 -1.2125 5 1 1.2801 2.7464 0.0006 6 1 3.0987 1.6962 1.2125 7 6 2.0089 -1.2091 0.0005 8 1 3.0889 -1.2091 0.0001 9 6 1.3023 -2.4327 0.0005 10 6 -0.1564 -2.6125 -0.0051 11 6 -0.3802 -3.9381 -0.0006 12 7 0.8240 -4.6049 0.0023 13 6 1.8465 -3.7168 0.0010 14 6 0.9318 -6.0723 0.0079 15 6 -0.4236 -6.6462 0.4413 16 6 -1.5406 -5.9623 -0.3536 17 8 -1.5867 -4.5720 -0.0037 18 1 -0.4850 0.8401 -0.0004 19 1 -0.9028 -1.8320 -0.0097 20 1 2.8988 -3.9602 0.0009 21 1 1.7049 -6.3820 0.7113 22 1 1.1798 -6.4281 -0.9920 23 1 -0.5715 -6.4655 1.5060 24 1 -0.4437 -7.7187 0.2480 25 1 -2.4959 -6.4296 -0.1146 26 1 -1.3430 -6.0627 -1.4208 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213825579.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = 9.748983 kcal Electronic energy + Delta-G solvation = -11877.409694 eV Core-core repulsion = 9729.272909 eV Total energy + Delta-G solvation = -2148.136786 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.97712 -36.67248 -33.86938 -32.77401 -29.11770 -27.13061 -26.12035 -23.77279 -21.52987 -19.31507 -18.41938 -17.06630 -15.70391 -15.32086 -14.77953 -14.47327 -13.99377 -13.43877 -13.06855 -12.63641 -11.90247 -11.48777 -11.10412 -10.87045 -10.77668 -10.75914 -10.43052 -10.10591 -9.81993 -9.40193 -9.04750 -6.97966 -6.28833 -6.23395 -3.84570 3.18891 3.27422 3.30745 3.70559 4.03978 4.22810 4.29443 4.53712 4.87377 4.99017 5.29614 5.49445 5.65961 5.76181 5.80355 5.87707 6.17781 6.56395 7.14761 7.46197 7.53547 7.74829 8.10298 8.45594 8.57111 9.03498 9.13801 9.37469 9.40706 10.71767 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.081838 B = 0.010091 C = 0.009103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.056154 B = 2774.103992 C = 3075.111537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.069 3.931 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.442 4.442 8 H 0.068 0.932 9 C 0.061 3.939 10 C -0.198 4.198 11 C 0.154 3.846 12 N -0.490 5.490 13 C -0.193 4.193 14 C 0.115 3.885 15 C -0.168 4.168 16 C 0.057 3.943 17 O -0.304 6.304 18 H 0.270 0.730 19 H 0.161 0.839 20 H 0.132 0.868 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -8.792 -0.220 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.476 4.476 8 H 0.086 0.914 9 C 0.055 3.945 10 C -0.226 4.226 11 C 0.007 3.993 12 N -0.186 5.186 13 C -0.314 4.314 14 C -0.008 4.008 15 C -0.206 4.206 16 C -0.020 4.020 17 O -0.216 6.216 18 H 0.081 0.919 19 H 0.178 0.822 20 H 0.150 0.850 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.292 -8.858 -0.175 8.953 hybrid contribution 0.604 0.339 -0.044 0.694 sum -0.688 -8.518 -0.219 8.549 Atomic orbital electron populations 1.69796 1.06986 1.27517 1.41243 1.25701 0.94762 1.00416 0.93420 0.86371 0.79676 0.81123 0.79253 1.19568 1.20787 1.19568 1.18647 0.93435 0.89268 1.46206 0.91394 1.18239 0.90143 0.90564 0.95562 1.21949 0.97435 0.89097 1.14106 1.19235 0.76538 0.90296 1.13219 1.43610 1.05579 1.03318 1.66117 1.21282 0.89960 0.88032 1.32117 1.21594 0.97233 0.81078 1.00915 1.22456 0.95529 1.00692 1.01966 1.22654 0.99065 0.82015 0.98224 1.86572 1.25708 1.21965 1.87377 0.91939 0.82201 0.84996 0.90811 0.92165 0.90323 0.89666 0.88536 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.32 10.41 55.53 0.58 -22.75 15 2 C 0.07 1.90 5.49 -17.36 -0.10 1.80 15 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.44 -12.77 9.40 -37.91 -0.36 -13.12 15 8 H 0.07 1.87 7.84 -52.49 -0.41 1.45 15 9 C 0.06 1.79 6.10 -104.74 -0.64 1.15 15 10 C -0.20 -5.68 9.87 -37.39 -0.37 -6.05 15 11 C 0.15 3.95 7.45 -16.28 -0.12 3.83 15 12 N -0.49 -11.50 3.15 -115.24 -0.36 -11.86 15 13 C -0.19 -5.00 11.58 -15.50 -0.18 -5.18 15 14 C 0.11 1.96 7.05 -3.47 -0.02 1.94 15 15 C -0.17 -2.42 6.14 -26.40 -0.16 -2.58 15 16 C 0.06 0.91 6.99 37.27 0.26 1.17 15 17 O -0.30 -6.80 10.65 -20.65 -0.22 -7.02 15 18 H 0.27 7.03 8.30 -40.82 -0.34 6.69 15 19 H 0.16 4.79 6.01 -52.49 -0.32 4.48 15 20 H 0.13 3.12 8.06 -52.48 -0.42 2.70 15 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 LS Contribution 224.22 15.07 3.38 3.38 Total: -1.00 -31.70 224.22 -6.16 -37.86 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.82 Total: 2.04 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.69 Total: -17.05 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.22 Total: -34.61 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.22 Total: -7.02 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.70 -6.16 -37.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213825579.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.609 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds