Wall clock time and date at job start Mon Mar 30 2020 01:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31052 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48506 * 109.47307 * 274.97761 * 3 2 1 5 5 H 1.48502 * 109.47359 * 34.97642 * 3 2 1 6 6 H 1.48500 * 109.47146 * 154.97624 * 3 2 1 7 7 C 1.39670 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00159 * 186.26116 * 7 2 1 9 9 C 1.41348 * 119.99963 * 6.26597 * 7 2 1 10 10 C 1.47153 * 127.16852 * 352.70752 * 9 7 2 11 11 C 1.34475 * 106.55368 * 179.97438 * 10 9 7 12 12 N 1.36283 * 109.47824 * 359.97438 * 11 10 9 13 13 C 1.35740 * 110.04056 * 0.05397 * 12 11 10 14 14 C 1.50888 * 123.59872 * 179.97438 * 13 12 11 15 15 O 1.43478 * 107.83490 * 345.78328 * 14 13 12 16 16 C 1.43150 * 113.78136 * 49.13411 * 15 14 13 17 17 C 1.47106 * 127.27058 * 180.10143 * 12 11 10 18 18 H 0.97002 * 120.00251 * 359.97438 * 1 2 3 19 19 H 1.07997 * 126.72932 * 0.02562 * 10 9 7 20 20 H 1.08000 * 125.26515 * 179.97438 * 11 10 9 21 21 H 1.09000 * 109.80356 * 105.38400 * 14 13 12 22 22 H 1.09002 * 109.79783 * 226.18496 * 14 13 12 23 23 H 1.09001 * 109.39722 * 169.68847 * 16 15 14 24 24 H 1.08997 * 109.36371 * 49.85504 * 16 15 14 25 25 H 1.08997 * 109.72181 * 282.83401 * 17 12 11 26 26 H 1.09004 * 109.71428 * 43.43516 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 2.3868 2.1072 -1.3948 5 1 1.4985 2.6201 0.8026 6 1 3.5907 1.4121 0.5922 7 6 2.0089 -1.2096 -0.0005 8 1 3.0841 -1.2124 0.1015 9 6 1.3085 -2.4300 -0.1347 10 6 -0.1504 -2.6224 -0.1343 11 6 -0.3629 -3.9413 -0.2886 12 7 0.8338 -4.5861 -0.3854 13 6 1.8521 -3.6932 -0.2942 14 6 3.3093 -4.0786 -0.3633 15 8 3.3960 -5.5011 -0.1977 16 6 2.5000 -6.2358 -1.0383 17 6 1.0563 -6.0293 -0.5638 18 1 -0.4850 0.8400 0.0004 19 1 -0.9031 -1.8549 -0.0313 20 1 -1.3320 -4.4162 -0.3294 21 1 3.7210 -3.7940 -1.3316 22 1 3.8613 -3.5798 0.4333 23 1 2.7482 -7.2962 -0.9925 24 1 2.5982 -5.8846 -2.0654 25 1 0.9021 -6.5451 0.3840 26 1 0.3644 -6.4184 -1.3109 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213825672.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:39 Heat of formation + Delta-G solvation = 1.557251 kcal Electronic energy + Delta-G solvation = -11957.612113 eV Core-core repulsion = 9809.120108 eV Total energy + Delta-G solvation = -2148.492006 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74036 -36.77159 -33.53969 -31.68657 -28.93063 -28.08480 -25.13387 -24.08943 -21.72872 -19.26952 -17.74680 -16.99487 -15.73358 -15.27666 -14.82784 -14.15670 -14.12520 -13.40232 -12.70528 -12.55066 -11.87073 -11.35430 -11.15158 -10.93366 -10.75587 -10.62489 -10.53050 -9.88682 -9.49717 -9.18023 -8.97251 -6.95982 -6.61468 -6.31889 -3.90452 3.11557 3.24089 3.28419 3.68951 4.06760 4.19910 4.43714 4.53414 5.16477 5.43659 5.57016 5.68896 5.81192 6.01057 6.13861 6.28829 6.37878 6.56443 7.30665 7.39620 7.57910 7.80414 7.98264 8.36231 8.57963 8.96982 8.99752 9.33552 9.34391 10.64355 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.057373 B = 0.011823 C = 0.009960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.913801 B = 2367.704227 C = 2810.435057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.070 3.930 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.442 4.442 8 H 0.067 0.933 9 C 0.061 3.939 10 C -0.199 4.199 11 C -0.042 4.042 12 N -0.464 5.464 13 C -0.199 4.199 14 C 0.166 3.834 15 O -0.392 6.392 16 C 0.058 3.942 17 C 0.086 3.914 18 H 0.269 0.731 19 H 0.154 0.846 20 H 0.129 0.871 21 H 0.042 0.958 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -6.630 -1.928 7.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.055 3.945 10 C -0.228 4.228 11 C -0.168 4.168 12 N -0.149 5.149 13 C -0.303 4.303 14 C 0.090 3.910 15 O -0.311 6.311 16 C -0.020 4.020 17 C -0.038 4.038 18 H 0.080 0.920 19 H 0.171 0.829 20 H 0.147 0.853 21 H 0.060 0.940 22 H 0.108 0.892 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.755 -6.903 -1.831 7.354 hybrid contribution -0.030 0.845 -0.210 0.871 sum 1.725 -6.058 -2.041 6.621 Atomic orbital electron populations 1.69801 1.07071 1.27445 1.41169 1.25693 0.94740 1.00443 0.93305 0.86322 0.80222 0.81556 0.78524 1.20054 1.20684 1.19054 1.18733 0.93892 0.89544 1.45373 0.91506 1.18023 0.91363 0.89699 0.95439 1.22693 0.96983 0.92873 1.10226 1.21302 0.87377 0.93745 1.14391 1.42868 1.05491 1.03877 1.62692 1.20475 0.88623 0.90288 1.30918 1.20821 0.92161 0.77956 1.00055 1.87986 1.59906 1.19688 1.63509 1.22658 0.88437 0.96699 0.94172 1.22181 0.97858 0.82795 1.00929 0.92034 0.82870 0.85289 0.93966 0.89169 0.88679 0.92882 0.91841 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.71 10.48 55.53 0.58 -22.13 15 2 C 0.07 1.90 5.48 -17.35 -0.10 1.80 15 3 Si 0.91 20.13 29.56 -169.99 -5.03 15.10 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.44 -12.50 9.25 -37.87 -0.35 -12.85 15 8 H 0.07 1.81 7.85 -52.48 -0.41 1.40 15 9 C 0.06 1.74 6.07 -105.02 -0.64 1.10 15 10 C -0.20 -5.43 9.89 -37.29 -0.37 -5.80 15 11 C -0.04 -0.99 11.42 -16.90 -0.19 -1.18 15 12 N -0.46 -10.73 3.13 -111.09 -0.35 -11.08 15 13 C -0.20 -5.05 6.76 -80.70 -0.55 -5.60 15 14 C 0.17 3.63 7.09 36.10 0.26 3.89 15 15 O -0.39 -7.84 10.81 -35.23 -0.38 -8.22 15 16 C 0.06 0.95 6.80 37.35 0.25 1.20 15 17 C 0.09 1.50 7.24 -3.52 -0.03 1.48 15 18 H 0.27 6.81 8.30 -40.82 -0.34 6.47 15 19 H 0.15 4.31 6.08 -52.49 -0.32 3.99 15 20 H 0.13 2.60 8.06 -52.49 -0.42 2.18 15 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.09 1.93 8.14 -51.93 -0.42 1.51 15 23 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.05 0.86 8.09 -51.93 -0.42 0.44 15 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 224.40 15.07 3.38 3.38 Total: -1.00 -30.85 224.40 -6.32 -37.17 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -2.82 Total: 1.73 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.71 Total: -15.95 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.23 Total: -33.21 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.38 Total: -8.22 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.85 -6.32 -37.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213825672.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.728 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds