Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31052 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48506 * 109.47307 * 274.97761 * 3 2 1 5 5 H 1.48502 * 109.47359 * 34.97642 * 3 2 1 6 6 H 1.48500 * 109.47146 * 154.97624 * 3 2 1 7 7 C 1.39670 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00159 * 186.26116 * 7 2 1 9 9 C 1.41348 * 119.99963 * 6.26597 * 7 2 1 10 10 C 1.47153 * 127.16852 * 352.70752 * 9 7 2 11 11 C 1.34475 * 106.55368 * 179.97438 * 10 9 7 12 12 N 1.36283 * 109.47824 * 359.97438 * 11 10 9 13 13 C 1.35740 * 110.04056 * 0.05397 * 12 11 10 14 14 C 1.50888 * 123.59872 * 179.97438 * 13 12 11 15 15 O 1.43478 * 107.83490 * 345.78328 * 14 13 12 16 16 C 1.43150 * 113.78136 * 49.13411 * 15 14 13 17 17 C 1.47106 * 127.27058 * 180.10143 * 12 11 10 18 18 H 0.97002 * 120.00251 * 359.97438 * 1 2 3 19 19 H 1.07997 * 126.72932 * 0.02562 * 10 9 7 20 20 H 1.08000 * 125.26515 * 179.97438 * 11 10 9 21 21 H 1.09000 * 109.80356 * 105.38400 * 14 13 12 22 22 H 1.09002 * 109.79783 * 226.18496 * 14 13 12 23 23 H 1.09001 * 109.39722 * 169.68847 * 16 15 14 24 24 H 1.08997 * 109.36371 * 49.85504 * 16 15 14 25 25 H 1.08997 * 109.72181 * 282.83401 * 17 12 11 26 26 H 1.09004 * 109.71428 * 43.43516 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 2.3868 2.1072 -1.3948 5 1 1.4985 2.6201 0.8026 6 1 3.5907 1.4121 0.5922 7 6 2.0089 -1.2096 -0.0005 8 1 3.0841 -1.2124 0.1015 9 6 1.3085 -2.4300 -0.1347 10 6 -0.1504 -2.6224 -0.1343 11 6 -0.3629 -3.9413 -0.2886 12 7 0.8338 -4.5861 -0.3854 13 6 1.8521 -3.6932 -0.2942 14 6 3.3093 -4.0786 -0.3633 15 8 3.3960 -5.5011 -0.1977 16 6 2.5000 -6.2358 -1.0383 17 6 1.0563 -6.0293 -0.5638 18 1 -0.4850 0.8400 0.0004 19 1 -0.9031 -1.8549 -0.0313 20 1 -1.3320 -4.4162 -0.3294 21 1 3.7210 -3.7940 -1.3316 22 1 3.8613 -3.5798 0.4333 23 1 2.7482 -7.2962 -0.9925 24 1 2.5982 -5.8846 -2.0654 25 1 0.9021 -6.5451 0.3840 26 1 0.3644 -6.4184 -1.3109 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213825672.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = -18.552736 kcal Electronic energy + Delta-G solvation = -11958.484148 eV Core-core repulsion = 9809.120108 eV Total energy + Delta-G solvation = -2149.364040 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.51738 -38.39806 -35.47141 -33.37563 -30.76518 -29.86344 -26.98798 -25.83136 -23.33350 -21.21904 -19.50842 -18.79857 -17.52185 -16.86362 -16.62956 -15.84711 -15.69980 -15.00049 -14.48389 -14.23316 -13.65630 -13.16304 -12.91001 -12.72666 -12.60304 -12.30276 -12.06268 -11.66882 -11.37817 -11.08069 -10.69418 -8.93879 -8.53930 -8.29815 -5.96518 1.34657 1.42444 1.56084 1.81890 2.33029 2.44248 2.48742 3.00981 3.61620 3.81066 4.14986 4.27218 4.37198 4.48580 4.55351 4.66469 4.81526 4.88499 5.36175 5.42770 5.70838 5.97956 6.11161 6.32389 6.58504 6.97437 7.13605 7.29936 7.35720 8.67713 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.057373 B = 0.011823 C = 0.009960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.913801 B = 2367.704227 C = 2810.435057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.021 3.979 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.478 4.478 8 H 0.064 0.936 9 C 0.009 3.991 10 C -0.247 4.247 11 C -0.029 4.029 12 N -0.463 5.463 13 C -0.202 4.202 14 C 0.171 3.829 15 O -0.399 6.399 16 C 0.051 3.949 17 C 0.075 3.925 18 H 0.274 0.726 19 H 0.134 0.866 20 H 0.169 0.831 21 H 0.052 0.948 22 H 0.087 0.913 23 H 0.144 0.856 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -8.161 -2.402 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.002 3.998 10 C -0.276 4.276 11 C -0.157 4.157 12 N -0.145 5.145 13 C -0.308 4.308 14 C 0.095 3.905 15 O -0.318 6.318 16 C -0.025 4.025 17 C -0.046 4.046 18 H 0.084 0.916 19 H 0.151 0.849 20 H 0.186 0.814 21 H 0.070 0.930 22 H 0.105 0.895 23 H 0.162 0.838 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.327 -8.486 -2.311 9.097 hybrid contribution -0.248 1.114 -0.083 1.144 sum 2.079 -7.372 -2.394 8.025 Atomic orbital electron populations 1.69927 1.08455 1.28491 1.41794 1.26589 0.95684 1.03877 0.92633 0.85189 0.78832 0.76731 0.78774 1.19331 1.19787 1.18505 1.19014 0.94006 0.90864 1.47257 0.91737 1.18515 0.92408 0.91230 0.97631 1.22627 0.96586 0.94449 1.13931 1.21687 0.89171 0.92905 1.11979 1.43287 1.04595 1.06203 1.60464 1.20978 0.90731 0.90172 1.28943 1.20712 0.89944 0.79477 1.00417 1.87977 1.60927 1.18317 1.64570 1.23049 0.87084 0.98821 0.93589 1.22671 0.99656 0.79226 1.03048 0.91626 0.84882 0.81405 0.93018 0.89528 0.83832 0.92612 0.90259 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.90 10.48 21.79 0.23 -48.67 15 2 C 0.02 1.16 5.48 85.16 0.47 1.63 15 3 Si 0.98 42.14 29.56 68.60 2.03 44.17 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 15 7 C -0.48 -28.00 9.25 23.38 0.22 -27.78 15 8 H 0.06 3.62 7.85 -2.91 -0.02 3.60 15 9 C 0.01 0.51 6.07 -20.12 -0.12 0.39 15 10 C -0.25 -13.89 9.89 23.75 0.23 -13.66 15 11 C -0.03 -1.33 11.42 83.14 0.95 -0.38 15 12 N -0.46 -20.51 3.13 -505.37 -1.58 -22.09 15 13 C -0.20 -10.22 6.76 42.06 0.28 -9.93 15 14 C 0.17 7.33 7.09 71.30 0.51 7.84 15 15 O -0.40 -14.86 10.81 -148.98 -1.61 -16.48 15 16 C 0.05 1.46 6.80 72.11 0.49 1.95 15 17 C 0.08 2.32 7.24 86.39 0.63 2.95 15 18 H 0.27 14.30 8.30 -92.71 -0.77 13.53 15 19 H 0.13 7.87 6.08 -2.91 -0.02 7.85 15 20 H 0.17 6.33 8.06 -2.91 -0.02 6.31 15 21 H 0.05 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.09 3.72 8.14 -2.39 -0.02 3.70 15 23 H 0.14 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.06 1.58 8.09 -2.39 -0.02 1.56 15 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 Total: -1.00 -68.76 224.40 3.89 -64.88 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.17 Total: 15.20 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.65 Total: -37.00 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.35 Total: -70.77 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.61 Total: -16.48 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.76 3.89 -64.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213825672.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.325 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds