Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38662 * 120.79336 * 90.00136 * 10 9 7 12 12 C 1.38184 * 119.16757 * 179.97438 * 11 10 9 13 13 N 1.31879 * 120.76094 * 0.02562 * 12 11 10 14 14 C 1.31854 * 121.73125 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.62213 * 180.02562 * 14 13 12 16 16 O 1.42899 * 109.46942 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.76005 * 359.74388 * 14 13 12 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08005 * 120.41456 * 359.97438 * 11 10 9 22 22 H 1.07997 * 119.62010 * 179.97438 * 12 11 10 23 23 H 1.08994 * 109.46939 * 300.00163 * 15 14 13 24 24 H 1.08997 * 109.47027 * 60.00357 * 15 14 13 25 25 H 0.96706 * 113.99765 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.41980 * 180.26362 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6914 -4.1895 1.1784 12 6 3.5885 -5.2396 1.1346 13 7 4.0059 -5.7225 -0.0195 14 6 3.5889 -5.2294 -1.1690 15 6 4.0965 -5.8181 -2.4601 16 8 3.5083 -5.1258 -3.5631 17 6 2.6870 -4.1825 -1.2037 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.3535 -3.7981 2.1266 22 1 3.9528 -5.6692 2.0560 23 1 5.1809 -5.7172 -2.5038 24 1 3.8275 -6.8733 -2.5088 25 1 3.7903 -5.4529 -4.4283 26 1 2.3459 -3.7856 -2.1484 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213826268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = -29.201385 kcal Electronic energy + Delta-G solvation = -11384.775478 eV Core-core repulsion = 9234.949678 eV Total energy + Delta-G solvation = -2149.825800 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.62811 -36.61917 -33.99637 -31.98209 -31.06986 -27.66653 -26.23414 -23.63772 -22.18416 -20.09260 -17.33292 -16.40574 -15.75534 -15.20173 -14.96176 -14.74461 -14.42057 -13.54265 -12.98516 -12.36582 -11.98584 -11.65860 -11.53443 -10.96636 -10.77078 -10.44218 -10.19261 -9.98162 -9.64057 -8.81049 -8.47742 -8.44684 -8.31610 -6.09911 -4.13915 1.75883 2.06399 3.27273 3.34781 3.40263 4.06902 4.33986 4.49293 5.10192 5.24686 5.35079 5.39030 5.60243 5.78010 5.88946 6.06559 6.31806 6.45228 6.89460 6.98984 7.36895 7.49846 7.67085 7.74939 7.85715 8.23087 8.51299 8.90669 9.50228 11.00528 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.041562 B = 0.009652 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.530037 B = 2900.217506 C = 3192.427544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.047 3.953 10 C 0.003 3.997 11 C -0.177 4.177 12 C 0.089 3.911 13 N -0.508 5.508 14 C 0.102 3.898 15 C 0.136 3.864 16 O -0.565 6.565 17 C -0.149 4.149 18 H 0.263 0.737 19 H 0.033 0.967 20 H 0.034 0.966 21 H 0.130 0.870 22 H 0.148 0.852 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.381 0.619 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -9.074 -2.735 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.005 4.005 11 C -0.197 4.197 12 C -0.067 4.067 13 N -0.219 5.219 14 C -0.034 4.034 15 C 0.058 3.942 16 O -0.370 6.370 17 C -0.168 4.168 18 H 0.072 0.928 19 H 0.051 0.949 20 H 0.052 0.948 21 H 0.148 0.852 22 H 0.165 0.835 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.228 0.772 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.154 -9.314 -2.270 11.392 hybrid contribution 0.114 1.361 -0.328 1.405 sum 6.268 -7.953 -2.597 10.454 Atomic orbital electron populations 1.69967 1.06053 1.26872 1.50238 1.25005 0.94913 0.99337 0.94972 0.86438 0.80105 0.83244 0.77701 1.19662 1.20805 1.20844 1.21026 0.93046 0.89655 1.51432 0.92433 1.18403 0.92466 0.89330 0.98815 1.21190 0.94025 0.93587 0.91709 1.22075 0.99974 0.98130 0.99548 1.22432 0.94937 0.94333 0.95023 1.67070 1.26263 1.30670 0.97935 1.20683 0.95529 0.94664 0.92561 1.20464 0.96060 0.94180 0.83507 1.86507 1.71767 1.62232 1.16447 1.21825 0.98444 0.96845 0.99720 0.92769 0.94874 0.94814 0.85239 0.83506 0.92016 0.92073 0.77205 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 7 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 9 C 0.05 1.22 5.15 -29.03 -0.15 1.07 15 10 C 0.00 0.06 5.11 -104.32 -0.53 -0.47 15 11 C -0.18 -3.52 9.82 -39.44 -0.39 -3.90 15 12 C 0.09 1.59 11.18 -17.55 -0.20 1.39 15 13 N -0.51 -9.50 10.27 -9.47 -0.10 -9.60 15 14 C 0.10 1.93 6.78 -82.59 -0.56 1.37 15 15 C 0.14 1.95 7.59 36.01 0.27 2.22 15 16 O -0.56 -7.85 12.11 -35.23 -0.43 -8.28 15 17 C -0.15 -3.15 9.12 -39.44 -0.36 -3.51 15 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 19 H 0.03 0.89 8.10 -51.93 -0.42 0.47 15 20 H 0.03 0.92 8.10 -51.93 -0.42 0.50 15 21 H 0.13 2.38 8.06 -52.48 -0.42 1.96 15 22 H 0.15 2.06 8.06 -52.49 -0.42 1.63 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 25 H 0.38 3.01 9.12 45.56 0.42 3.43 15 26 H 0.14 2.98 7.00 -52.49 -0.37 2.61 15 LS Contribution 236.60 15.07 3.57 3.57 Total: -1.00 -32.06 236.60 -5.59 -37.65 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.03 Total: 0.79 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.32 Total: -15.11 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.64 Total: -35.23 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.43 Total: -8.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.06 -5.59 -37.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213826268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.452 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds