Wall clock time and date at job start Mon Mar 30 2020 01:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38662 * 120.79336 * 90.00136 * 10 9 7 12 12 C 1.38184 * 119.16757 * 179.97438 * 11 10 9 13 13 N 1.31879 * 120.76094 * 0.02562 * 12 11 10 14 14 C 1.31854 * 121.73125 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.62213 * 180.02562 * 14 13 12 16 16 O 1.42899 * 109.46942 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.76005 * 359.74388 * 14 13 12 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08005 * 120.41456 * 359.97438 * 11 10 9 22 22 H 1.07997 * 119.62010 * 179.97438 * 12 11 10 23 23 H 1.08994 * 109.46939 * 300.00163 * 15 14 13 24 24 H 1.08997 * 109.47027 * 60.00357 * 15 14 13 25 25 H 0.96706 * 113.99765 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.41980 * 180.26362 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6914 -4.1895 1.1784 12 6 3.5885 -5.2396 1.1346 13 7 4.0059 -5.7225 -0.0195 14 6 3.5889 -5.2294 -1.1690 15 6 4.0965 -5.8181 -2.4601 16 8 3.5083 -5.1258 -3.5631 17 6 2.6870 -4.1825 -1.2037 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.3535 -3.7981 2.1266 22 1 3.9528 -5.6692 2.0560 23 1 5.1809 -5.7172 -2.5038 24 1 3.8275 -6.8733 -2.5088 25 1 3.7903 -5.4529 -4.4283 26 1 2.3459 -3.7856 -2.1484 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213826268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:49 Heat of formation + Delta-G solvation = -52.677733 kcal Electronic energy + Delta-G solvation = -11385.793489 eV Core-core repulsion = 9234.949678 eV Total energy + Delta-G solvation = -2150.843811 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.13071 -37.72630 -35.92268 -33.91250 -32.49504 -29.64457 -27.52509 -25.63283 -23.71622 -21.70670 -18.60172 -18.46689 -17.35175 -16.68294 -16.46644 -16.13566 -16.08508 -14.87152 -14.65046 -14.20007 -13.83118 -13.53681 -12.92004 -12.75494 -12.66288 -12.17074 -11.95757 -11.74236 -11.21423 -10.66442 -10.36493 -10.21025 -9.75860 -8.27509 -6.40726 0.25053 0.45130 1.37684 1.38179 1.51865 2.36331 2.92172 2.95593 3.04803 3.87624 3.98408 4.12012 4.26551 4.42762 4.53319 4.56343 4.82080 4.88851 5.18437 5.22858 5.29089 5.65901 5.79368 5.86426 6.08248 6.70451 6.96740 7.02705 7.28274 8.83497 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.041562 B = 0.009652 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.530037 B = 2900.217506 C = 3192.427544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.056 3.944 10 C -0.025 4.025 11 C -0.187 4.187 12 C 0.103 3.897 13 N -0.506 5.506 14 C 0.104 3.896 15 C 0.139 3.861 16 O -0.587 6.587 17 C -0.169 4.169 18 H 0.268 0.732 19 H 0.014 0.986 20 H 0.005 0.995 21 H 0.139 0.861 22 H 0.193 0.807 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.406 0.594 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.857 -9.712 -2.616 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.019 3.981 10 C -0.033 4.033 11 C -0.207 4.207 12 C -0.054 4.054 13 N -0.218 5.218 14 C -0.033 4.033 15 C 0.061 3.939 16 O -0.397 6.397 17 C -0.189 4.189 18 H 0.077 0.923 19 H 0.032 0.968 20 H 0.024 0.976 21 H 0.156 0.844 22 H 0.209 0.791 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.258 0.742 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.013 -9.970 -2.172 12.974 hybrid contribution -0.466 1.479 -0.383 1.598 sum 7.546 -8.491 -2.556 11.643 Atomic orbital electron populations 1.70077 1.07658 1.28161 1.50777 1.25927 0.95816 1.03161 0.94214 0.85337 0.78725 0.78428 0.78202 1.19157 1.19978 1.19713 1.21297 0.92928 0.91074 1.51804 0.93012 1.18129 0.92765 0.90761 0.96434 1.20971 0.94804 0.93678 0.93805 1.22212 1.00687 0.98972 0.98796 1.23087 0.93058 0.92761 0.96460 1.67278 1.26015 1.30380 0.98111 1.21353 0.93952 0.93320 0.94684 1.20556 0.96896 0.94870 0.81558 1.86459 1.72301 1.62957 1.17953 1.21768 1.00102 0.98450 0.98578 0.92312 0.96779 0.97639 0.84361 0.79071 0.89875 0.89489 0.74237 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 15 2 C 0.01 0.43 5.46 84.66 0.46 0.90 15 3 Si 0.97 44.55 29.54 68.60 2.03 46.57 15 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.53 -31.05 9.09 25.60 0.23 -30.82 15 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 15 9 C 0.06 3.07 5.15 29.10 0.15 3.22 15 10 C -0.02 -1.15 5.11 -19.67 -0.10 -1.25 15 11 C -0.19 -7.30 9.82 22.36 0.22 -7.08 15 12 C 0.10 3.38 11.18 84.67 0.95 4.33 15 13 N -0.51 -17.56 10.27 -183.89 -1.89 -19.45 15 14 C 0.10 3.73 6.78 42.55 0.29 4.02 15 15 C 0.14 3.60 7.59 71.24 0.54 4.14 15 16 O -0.59 -15.35 12.11 -148.98 -1.80 -17.16 15 17 C -0.17 -7.27 9.12 22.36 0.20 -7.07 15 18 H 0.27 15.04 8.31 -92.70 -0.77 14.27 15 19 H 0.01 0.80 8.10 -2.38 -0.02 0.78 15 20 H 0.01 0.31 8.10 -2.39 -0.02 0.29 15 21 H 0.14 5.03 8.06 -2.91 -0.02 5.00 15 22 H 0.19 4.51 8.06 -2.91 -0.02 4.48 15 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.41 5.49 9.12 -74.05 -0.68 4.81 15 26 H 0.12 5.55 7.00 -2.91 -0.02 5.53 15 Total: -1.00 -69.68 236.60 2.07 -67.61 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.51 Total: 7.73 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 2.94 Total: -29.61 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.60 Total: -75.15 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.80 Total: -17.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.68 2.07 -67.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213826268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.930 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds