Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35580 * 116.99867 * 2 1 4 4 C 1.38982 * 120.58962 * 359.97438 * 3 2 1 5 5 C 1.38602 * 118.53838 * 179.77292 * 4 3 2 6 6 C 1.38952 * 119.65558 * 0.49347 * 5 4 3 7 7 C 1.50702 * 119.40455 * 179.76909 * 6 5 4 8 8 N 1.31338 * 121.18528 * 359.49328 * 6 5 4 9 9 C 1.33695 * 121.57855 * 0.25202 * 8 6 5 10 10 C 1.41031 * 119.89470 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00219 * 173.60722 * 10 9 8 12 12 C 1.40062 * 120.00505 * 353.61004 * 10 9 8 13 13 N 1.30765 * 119.99486 * 6.27195 * 12 10 9 14 14 Si 1.86799 * 120.00460 * 186.27087 * 12 10 9 15 15 H 1.48495 * 109.47185 * 94.98616 * 14 12 10 16 16 H 1.48499 * 109.46888 * 214.98467 * 14 12 10 17 17 H 1.48504 * 109.46811 * 334.98400 * 14 12 10 18 18 H 1.09001 * 109.47383 * 300.00457 * 1 2 3 19 19 H 1.09003 * 109.47345 * 59.99733 * 1 2 3 20 20 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.72844 * 0.02562 * 4 3 2 22 22 H 1.08001 * 120.17150 * 180.23943 * 5 4 3 23 23 H 1.08998 * 109.46738 * 269.72779 * 7 6 5 24 24 H 1.08995 * 109.46804 * 29.72966 * 7 6 5 25 25 H 1.09002 * 109.46576 * 149.72905 * 7 6 5 26 26 H 0.96992 * 119.99868 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 1.2995 2.3814 -0.0005 5 6 1.9725 3.5930 0.0043 6 6 3.3620 3.6077 -0.0009 7 6 4.0879 4.9284 -0.0008 8 7 4.0539 2.4914 -0.0004 9 6 3.4547 1.2963 0.0001 10 6 4.2326 0.1199 0.0012 11 1 3.7552 -0.8431 0.1057 12 6 5.6244 0.2005 -0.1332 13 7 6.2144 1.3675 -0.1364 14 14 6.6379 -1.3589 -0.3079 15 1 6.8702 -1.6396 -1.7475 16 1 7.9426 -1.1808 0.3785 17 1 5.9064 -2.4960 0.3064 18 1 -0.3634 0.5139 0.8899 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 0.2200 2.3496 -0.0005 22 1 1.4199 4.5209 0.0079 23 1 4.2633 5.2465 -1.0285 24 1 3.4828 5.6755 0.5126 25 1 5.0426 4.8181 0.5134 26 1 7.1782 1.4234 -0.2298 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213826359.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -10.476371 kcal Electronic energy + Delta-G solvation = -11821.099327 eV Core-core repulsion = 9672.085504 eV Total energy + Delta-G solvation = -2149.013823 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84676 -36.70334 -33.70939 -30.86079 -30.28234 -27.48427 -26.33010 -24.51713 -21.44420 -20.15955 -17.39388 -16.62933 -15.60558 -14.75998 -14.70471 -13.91793 -13.08380 -12.93162 -12.69983 -12.43555 -11.59098 -11.55222 -11.21838 -11.11667 -10.85924 -10.57179 -10.41082 -10.10848 -9.74002 -9.28057 -8.07892 -7.64414 -7.02874 -6.38615 -4.35332 2.74878 2.97902 3.13102 3.18186 3.22108 4.00361 4.47960 4.76033 5.71698 5.73960 5.85713 5.91112 5.97133 6.03798 6.28973 6.38591 6.56009 6.68368 6.96764 6.99075 7.24284 7.48954 7.63461 8.00077 8.27038 8.35726 8.75661 9.07231 10.12652 10.35460 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.016186 C = 0.010671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.254004 B = 1729.428927 C = 2623.404311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C -0.040 4.040 4 C -0.145 4.145 5 C -0.291 4.291 6 C 0.120 3.880 7 C -0.086 4.086 8 N -0.464 5.464 9 C 0.254 3.746 10 C -0.415 4.415 11 H 0.090 0.910 12 C 0.066 3.934 13 N -0.716 5.716 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.260 1.260 18 H 0.038 0.962 19 H 0.038 0.962 20 H 0.082 0.918 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 0.002 -0.120 3.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C -0.088 4.088 4 C -0.169 4.169 5 C -0.314 4.314 6 C -0.023 4.023 7 C -0.144 4.144 8 N -0.180 5.180 9 C 0.127 3.873 10 C -0.447 4.447 11 H 0.108 0.892 12 C -0.159 4.159 13 N -0.338 5.338 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.184 1.184 18 H 0.057 0.943 19 H 0.057 0.943 20 H 0.101 0.899 21 H 0.119 0.881 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.663 -0.066 -0.124 2.667 hybrid contribution -0.925 -0.422 -0.131 1.025 sum -3.588 -0.488 -0.255 3.630 Atomic orbital electron populations 1.22734 0.81889 1.01756 0.99846 1.85941 1.18163 1.27917 1.90337 1.20260 0.93706 0.83182 1.11640 1.20914 0.97568 0.92832 1.05574 1.20863 0.94711 0.95972 1.19846 1.21088 0.90246 0.94881 0.96095 1.20448 0.99952 0.92977 1.00986 1.68730 1.35356 0.95590 1.18279 1.18200 0.85042 0.92284 0.91778 1.19550 0.90983 0.93214 1.40954 0.89182 1.26098 0.98631 0.97255 0.93883 1.70158 1.10332 1.24601 1.28690 0.86282 0.79054 0.82147 0.79169 1.19513 1.20168 1.18426 0.94294 0.94295 0.89939 0.88127 0.88803 0.92464 0.92994 0.91522 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.83 101.05 0.99 1.59 15 2 O -0.31 -7.36 9.63 -18.44 -0.18 -7.54 15 3 C -0.04 -1.04 6.73 -38.14 -0.26 -1.30 15 4 C -0.14 -3.42 9.13 -39.17 -0.36 -3.78 15 5 C -0.29 -6.85 9.74 -39.18 -0.38 -7.23 15 6 C 0.12 3.03 6.79 -82.54 -0.56 2.46 15 7 C -0.09 -1.75 10.16 36.01 0.37 -1.38 15 8 N -0.46 -13.20 7.79 -7.25 -0.06 -13.26 15 9 C 0.25 7.30 6.56 -84.83 -0.56 6.74 15 10 C -0.42 -11.65 8.93 -37.84 -0.34 -11.99 15 11 H 0.09 2.45 7.35 -52.49 -0.39 2.06 15 12 C 0.07 1.73 5.49 -17.32 -0.10 1.64 15 13 N -0.72 -19.40 11.49 55.55 0.64 -18.76 15 14 Si 0.91 19.17 29.57 -169.99 -5.03 14.14 15 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 17 H -0.26 -5.42 7.11 56.52 0.40 -5.01 15 18 H 0.04 0.63 7.70 -51.93 -0.40 0.23 15 19 H 0.04 0.63 7.70 -51.93 -0.40 0.23 15 20 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 21 H 0.10 2.04 6.44 -52.49 -0.34 1.70 15 22 H 0.09 1.93 8.06 -52.49 -0.42 1.51 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.90 8.07 -51.93 -0.42 0.48 15 25 H 0.07 1.38 8.14 -51.93 -0.42 0.95 15 26 H 0.27 6.64 8.29 -40.82 -0.34 6.30 15 LS Contribution 231.19 15.07 3.48 3.48 Total: -1.00 -30.67 231.19 -5.09 -35.76 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.77 Total: -0.59 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.19 Total: -13.23 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.58 Total: -32.02 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.18 Total: -7.54 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.67 -5.09 -35.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213826359.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.283 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds