Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35580 * 116.99867 * 2 1 4 4 C 1.38982 * 120.58962 * 359.97438 * 3 2 1 5 5 C 1.38602 * 118.53838 * 179.77292 * 4 3 2 6 6 C 1.38952 * 119.65558 * 0.49347 * 5 4 3 7 7 C 1.50702 * 119.40455 * 179.76909 * 6 5 4 8 8 N 1.31338 * 121.18528 * 359.49328 * 6 5 4 9 9 C 1.33695 * 121.57855 * 0.25202 * 8 6 5 10 10 C 1.41031 * 119.89470 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00219 * 173.60722 * 10 9 8 12 12 C 1.40062 * 120.00505 * 353.61004 * 10 9 8 13 13 N 1.30765 * 119.99486 * 6.27195 * 12 10 9 14 14 Si 1.86799 * 120.00460 * 186.27087 * 12 10 9 15 15 H 1.48495 * 109.47185 * 94.98616 * 14 12 10 16 16 H 1.48499 * 109.46888 * 214.98467 * 14 12 10 17 17 H 1.48504 * 109.46811 * 334.98400 * 14 12 10 18 18 H 1.09001 * 109.47383 * 300.00457 * 1 2 3 19 19 H 1.09003 * 109.47345 * 59.99733 * 1 2 3 20 20 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.72844 * 0.02562 * 4 3 2 22 22 H 1.08001 * 120.17150 * 180.23943 * 5 4 3 23 23 H 1.08998 * 109.46738 * 269.72779 * 7 6 5 24 24 H 1.08995 * 109.46804 * 29.72966 * 7 6 5 25 25 H 1.09002 * 109.46576 * 149.72905 * 7 6 5 26 26 H 0.96992 * 119.99868 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 1.2995 2.3814 -0.0005 5 6 1.9725 3.5930 0.0043 6 6 3.3620 3.6077 -0.0009 7 6 4.0879 4.9284 -0.0008 8 7 4.0539 2.4914 -0.0004 9 6 3.4547 1.2963 0.0001 10 6 4.2326 0.1199 0.0012 11 1 3.7552 -0.8431 0.1057 12 6 5.6244 0.2005 -0.1332 13 7 6.2144 1.3675 -0.1364 14 14 6.6379 -1.3589 -0.3079 15 1 6.8702 -1.6396 -1.7475 16 1 7.9426 -1.1808 0.3785 17 1 5.9064 -2.4960 0.3064 18 1 -0.3634 0.5139 0.8899 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 0.2200 2.3496 -0.0005 22 1 1.4199 4.5209 0.0079 23 1 4.2633 5.2465 -1.0285 24 1 3.4828 5.6755 0.5126 25 1 5.0426 4.8181 0.5134 26 1 7.1782 1.4234 -0.2298 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213826359.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -30.600897 kcal Electronic energy + Delta-G solvation = -11821.971992 eV Core-core repulsion = 9672.085504 eV Total energy + Delta-G solvation = -2149.886488 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.69659 -38.50271 -35.63647 -32.68955 -32.18590 -29.19783 -28.04408 -26.29590 -23.36635 -21.99788 -19.35305 -18.41665 -17.41856 -16.61414 -16.33657 -15.69388 -14.81188 -14.66235 -14.47553 -14.08552 -13.35169 -13.22629 -12.93242 -12.76053 -12.57854 -12.36725 -12.09989 -11.77877 -11.56554 -11.15465 -10.01085 -9.58946 -8.95020 -8.30188 -6.37135 0.86051 1.07535 1.40669 1.52865 1.55835 2.25244 2.82772 2.85637 3.81835 4.18710 4.20492 4.37700 4.46624 4.55547 4.70939 4.74195 4.93099 4.98186 5.09665 5.30712 5.32930 5.58825 5.73400 6.14826 6.32370 6.42591 6.80784 7.16891 8.18140 8.46450 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.016186 C = 0.010671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.254004 B = 1729.428927 C = 2623.404311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.336 6.336 3 C -0.057 4.057 4 C -0.145 4.145 5 C -0.284 4.284 6 C 0.090 3.910 7 C -0.078 4.078 8 N -0.497 5.497 9 C 0.213 3.787 10 C -0.455 4.455 11 H 0.083 0.917 12 C 0.022 3.978 13 N -0.754 5.754 14 Si 0.988 3.012 15 H -0.263 1.263 16 H -0.264 1.264 17 H -0.258 1.258 18 H 0.051 0.949 19 H 0.050 0.950 20 H 0.114 0.886 21 H 0.137 0.863 22 H 0.130 0.870 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 0.180 -0.231 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.250 6.250 3 C -0.105 4.105 4 C -0.170 4.170 5 C -0.306 4.306 6 C -0.053 4.053 7 C -0.136 4.136 8 N -0.213 5.213 9 C 0.086 3.914 10 C -0.487 4.487 11 H 0.101 0.899 12 C -0.199 4.199 13 N -0.377 5.377 14 Si 0.808 3.192 15 H -0.188 1.188 16 H -0.188 1.188 17 H -0.182 1.182 18 H 0.069 0.931 19 H 0.069 0.931 20 H 0.133 0.867 21 H 0.155 0.845 22 H 0.148 0.852 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.638 0.136 -0.232 3.648 hybrid contribution -0.828 -0.387 -0.088 0.918 sum -4.466 -0.251 -0.320 4.485 Atomic orbital electron populations 1.23107 0.78601 1.04390 1.00899 1.85882 1.21558 1.27203 1.90325 1.20333 0.93470 0.84815 1.11929 1.21336 0.99391 0.92045 1.04196 1.21333 0.94472 0.97497 1.17345 1.21897 0.91703 0.95707 0.95962 1.20477 0.99502 0.91487 1.02122 1.68687 1.36969 0.96449 1.19217 1.18662 0.86946 0.92868 0.92923 1.19758 0.92420 0.93056 1.43483 0.89864 1.26993 0.99120 1.00920 0.92877 1.70234 1.10999 1.26847 1.29602 0.85117 0.77349 0.77374 0.79357 1.18806 1.18799 1.18173 0.93082 0.93094 0.86746 0.84549 0.85176 0.91184 0.89573 0.92747 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.83 113.37 1.11 1.93 15 2 O -0.34 -15.86 9.63 -88.88 -0.86 -16.71 15 3 C -0.06 -3.01 6.73 23.20 0.16 -2.85 15 4 C -0.15 -6.61 9.13 22.54 0.21 -6.40 15 5 C -0.28 -12.74 9.74 22.53 0.22 -12.52 15 6 C 0.09 4.46 6.79 42.80 0.29 4.75 15 7 C -0.08 -3.07 10.16 71.24 0.72 -2.34 15 8 N -0.50 -28.90 7.79 -176.85 -1.38 -30.28 15 9 C 0.21 12.61 6.56 40.30 0.26 12.88 15 10 C -0.46 -26.48 8.93 23.40 0.21 -26.27 15 11 H 0.08 4.72 7.35 -2.91 -0.02 4.70 15 12 C 0.02 1.18 5.49 85.29 0.47 1.65 15 13 N -0.75 -41.99 11.49 21.85 0.25 -41.74 15 14 Si 0.99 40.01 29.57 68.60 2.03 42.04 15 15 H -0.26 -10.27 7.11 99.48 0.71 -9.57 15 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 18 H 0.05 1.52 7.70 -2.39 -0.02 1.50 15 19 H 0.05 1.52 7.70 -2.39 -0.02 1.50 15 20 H 0.11 2.92 8.14 -2.39 -0.02 2.91 15 21 H 0.14 5.07 6.44 -2.91 -0.02 5.05 15 22 H 0.13 4.82 8.06 -2.91 -0.02 4.79 15 23 H 0.07 2.52 8.14 -2.39 -0.02 2.51 15 24 H 0.09 2.72 8.07 -2.39 -0.02 2.70 15 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.28 13.94 8.29 -92.71 -0.77 13.17 15 Total: -1.00 -68.04 231.19 4.87 -63.17 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.17 Total: 12.69 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.65 Total: -29.17 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -1.13 Total: -72.02 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.86 Total: -16.71 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -68.04 4.87 -63.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213826359.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.570 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds