Wall clock time and date at job start Mon Mar 30 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32488 * 125.79487 * 2 1 4 4 C 1.33102 * 109.51914 * 180.02562 * 3 2 1 5 5 C 1.39644 * 125.81117 * 180.17819 * 4 3 2 6 6 H 1.08002 * 119.99902 * 180.02562 * 5 4 3 7 7 C 1.40067 * 120.00745 * 0.02710 * 5 4 3 8 8 N 1.30834 * 119.99390 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00599 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00722 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00473 * 9 7 5 12 12 H 1.48498 * 109.47210 * 150.00184 * 9 7 5 13 13 N 1.37747 * 108.36798 * 0.44924 * 4 3 2 14 14 C 1.36697 * 107.25304 * 359.22380 * 13 4 3 15 15 N 1.38197 * 111.60521 * 180.84447 * 14 13 4 16 16 C 1.48384 * 106.98605 * 341.68046 * 15 14 13 17 17 C 1.47173 * 143.86563 * 179.06268 * 13 4 3 18 18 H 1.09003 * 109.47316 * 90.01918 * 1 2 3 19 19 H 1.08989 * 109.47827 * 210.02081 * 1 2 3 20 20 H 1.09003 * 109.47001 * 330.02551 * 1 2 3 21 21 H 0.97000 * 119.99179 * 179.97438 * 8 7 5 22 22 H 1.00905 * 110.99643 * 103.61940 * 15 14 13 23 23 H 1.09000 * 111.25406 * 268.33854 * 16 15 14 24 24 H 1.09005 * 110.67994 * 144.65475 * 16 15 14 25 25 H 1.09001 * 110.70553 * 314.33287 * 17 13 4 26 26 H 1.08997 * 110.70893 * 77.57028 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0746 0.0000 4 6 3.5596 0.7016 -0.0006 5 6 4.6613 1.5597 0.0028 6 1 5.6620 1.1535 0.0016 7 6 4.4686 2.9470 0.0078 8 7 3.2563 3.4390 0.0098 9 14 5.9424 4.0948 0.0130 10 1 6.3321 4.3936 1.4143 11 1 7.0783 3.4448 -0.6889 12 1 5.5884 5.3581 -0.6826 13 7 3.6099 -0.6749 -0.0112 14 6 2.3202 -1.1278 0.0006 15 7 2.2659 -2.5087 0.0101 16 6 3.5919 -2.9978 -0.4418 17 6 4.5205 -1.8309 -0.0327 18 1 -0.3634 -0.0003 -1.0277 19 1 -0.3634 -0.8897 0.5141 20 1 -0.3633 0.8902 0.5135 21 1 3.1229 4.3998 0.0136 22 1 2.0363 -2.8552 0.9296 23 1 3.6103 -3.1497 -1.5210 24 1 3.8638 -3.9136 0.0832 25 1 5.3080 -1.6875 -0.7725 26 1 4.9458 -2.0050 0.9556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213829558.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:42 Heat of formation + Delta-G solvation = 53.569621 kcal Electronic energy + Delta-G solvation = -11956.032737 eV Core-core repulsion = 9842.088908 eV Total energy + Delta-G solvation = -2113.943829 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.41249 -37.86091 -35.23895 -33.40226 -30.51776 -29.78701 -28.87580 -24.78868 -23.40536 -21.50449 -20.45530 -19.04634 -17.53099 -16.95467 -15.79857 -15.49825 -15.36521 -14.83310 -14.35575 -13.96734 -13.42336 -13.32028 -13.07186 -12.85298 -12.72188 -12.38061 -12.33229 -11.91050 -11.22079 -10.54088 -9.94668 -9.68604 -8.54293 -8.36368 -6.24176 1.29705 1.40525 1.55836 1.66926 2.20395 2.42963 2.61459 3.14160 3.50854 3.80830 4.02723 4.26117 4.40013 4.54777 4.72632 4.83753 4.99167 5.08593 5.20428 5.21116 5.49983 5.68295 6.12706 6.22258 6.42378 6.73542 7.02562 7.32331 8.21169 8.58964 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.013073 C = 0.010344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.479301 B = 2141.364997 C = 2706.192179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.014 4.014 3 N -0.537 5.537 4 C 0.362 3.638 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.030 3.970 8 N -0.790 5.790 9 Si 0.998 3.002 10 H -0.263 1.263 11 H -0.257 1.257 12 H -0.269 1.269 13 N -0.557 5.557 14 C 0.006 3.994 15 N -0.588 5.588 16 C 0.059 3.941 17 C 0.076 3.924 18 H 0.057 0.943 19 H 0.075 0.925 20 H 0.051 0.949 21 H 0.278 0.722 22 H 0.345 0.655 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.085 0.915 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -8.259 0.738 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.148 4.148 3 N -0.259 5.259 4 C 0.119 3.881 5 C -0.533 4.533 6 H 0.098 0.902 7 C -0.189 4.189 8 N -0.416 5.416 9 Si 0.817 3.183 10 H -0.187 1.187 11 H -0.181 1.181 12 H -0.193 1.193 13 N -0.252 5.252 14 C -0.201 4.201 15 N -0.219 5.219 16 C -0.069 4.069 17 C -0.047 4.047 18 H 0.076 0.924 19 H 0.094 0.906 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.168 0.832 23 H 0.108 0.892 24 H 0.152 0.848 25 H 0.103 0.897 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.236 -7.423 0.128 7.754 hybrid contribution 1.329 0.011 0.676 1.492 sum 3.565 -7.412 0.804 8.264 Atomic orbital electron populations 1.19789 0.87419 1.01410 1.01107 1.21135 0.96699 0.86746 1.10239 1.71133 0.99349 1.26077 1.29361 1.19999 0.93332 0.76988 0.97794 1.18399 0.91304 0.91234 1.52328 0.90170 1.26762 1.00030 0.99655 0.92412 1.70207 1.23818 1.13975 1.33618 0.85000 0.77145 0.76808 0.79302 1.18746 1.18065 1.19321 1.47611 1.08425 1.06470 1.62740 1.21091 0.86817 0.89500 1.22684 1.58027 1.30561 1.02161 1.31180 1.23519 0.83824 0.96669 1.02914 1.22887 0.94114 0.85078 1.02620 0.92411 0.90574 0.93045 0.91226 0.83153 0.89198 0.84840 0.89663 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.67 10.44 71.24 0.74 -0.93 15 2 C -0.01 -0.73 7.16 42.65 0.31 -0.43 15 3 N -0.54 -33.11 9.35 -180.36 -1.69 -34.80 15 4 C 0.36 21.62 7.59 133.40 1.01 22.63 15 5 C -0.49 -28.52 9.43 23.05 0.22 -28.30 15 6 H 0.08 4.32 7.85 -2.91 -0.02 4.29 15 7 C 0.03 1.66 5.50 85.29 0.47 2.13 15 8 N -0.79 -46.38 11.88 21.85 0.26 -46.12 15 9 Si 1.00 40.53 29.56 68.60 2.03 42.56 15 10 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 11 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 12 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 13 N -0.56 -27.90 3.83 -512.29 -1.96 -29.86 15 14 C 0.01 0.27 8.04 131.98 1.06 1.33 15 15 N -0.59 -21.01 7.20 -335.55 -2.41 -23.43 15 16 C 0.06 1.65 7.91 86.57 0.68 2.33 15 17 C 0.08 2.72 8.04 86.81 0.70 3.42 15 18 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 19 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 20 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.28 14.74 8.30 -92.71 -0.77 13.97 15 22 H 0.35 10.66 8.86 -89.69 -0.79 9.87 15 23 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 24 H 0.13 2.40 8.14 -2.38 -0.02 2.38 15 25 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 Total: -1.00 -74.20 229.24 1.82 -72.39 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.40 Total: 17.08 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.19 Total: 2.18 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -5.80 Total: -134.20 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -74.20 1.82 -72.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213829558.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.955 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds