Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47184 * 2 1 4 4 C 1.35769 * 116.99941 * 179.97438 * 3 2 1 5 5 C 1.39517 * 120.76124 * 359.72979 * 4 3 2 6 6 C 1.38536 * 119.48678 * 179.70251 * 5 4 3 7 7 N 1.31499 * 121.08229 * 0.57842 * 6 5 4 8 8 C 1.33672 * 121.65369 * 359.71387 * 7 6 5 9 9 C 1.41446 * 119.80046 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99746 * 173.65963 * 9 8 7 11 11 C 1.40014 * 120.00074 * 353.67027 * 9 8 7 12 12 N 1.30749 * 120.00457 * 6.27337 * 11 9 8 13 13 Si 1.86807 * 119.99757 * 186.27833 * 11 9 8 14 14 H 1.48501 * 109.47142 * 94.98270 * 13 11 9 15 15 H 1.48498 * 109.46916 * 214.98072 * 13 11 9 16 16 H 1.48496 * 109.47105 * 334.98124 * 13 11 9 17 17 C 1.38801 * 120.75955 * 179.97438 * 4 3 2 18 18 H 1.09000 * 109.47452 * 300.00282 * 1 2 3 19 19 H 1.09010 * 109.46424 * 60.00296 * 1 2 3 20 20 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47452 * 239.99717 * 2 1 3 22 22 H 1.08998 * 109.47049 * 119.99699 * 2 1 3 23 23 H 1.07998 * 120.25571 * 359.96838 * 5 4 3 24 24 H 1.08000 * 119.45702 * 180.29602 * 6 5 4 25 25 H 0.97000 * 119.99905 * 180.02562 * 12 11 9 26 26 H 1.07995 * 120.55015 * 0.02705 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3523 1.5252 0.0005 5 6 4.2168 0.4301 0.0067 6 6 5.5859 0.6421 0.0009 7 7 6.0845 1.8589 0.0009 8 6 5.2975 2.9394 0.0009 9 6 5.8759 4.2302 0.0016 10 1 5.2484 5.1032 -0.1017 11 6 7.2619 4.3763 0.1359 12 7 8.0335 3.3207 0.1373 13 14 8.0088 6.0794 0.3130 14 1 8.1927 6.3918 1.7531 15 1 9.3250 6.1165 -0.3736 16 1 7.1024 7.0835 -0.2995 17 6 3.8999 2.8006 0.0000 18 1 -0.3634 0.5139 0.8899 19 1 -0.3632 0.5139 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.8218 -0.5750 0.0117 24 1 6.2546 -0.2060 0.0008 25 1 8.9937 3.4220 0.2308 26 1 3.2618 3.6719 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219506696.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = -34.769992 kcal Electronic energy + Delta-G solvation = -11483.132869 eV Core-core repulsion = 9333.065595 eV Total energy + Delta-G solvation = -2150.067273 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78269 -38.78571 -35.42340 -32.97148 -31.90629 -30.81000 -27.76735 -24.55001 -23.61173 -22.42864 -19.90483 -18.20229 -16.92389 -16.89578 -16.64033 -16.08156 -15.26694 -14.67260 -14.37410 -14.04288 -13.45424 -13.43343 -13.09770 -12.81218 -12.73899 -12.51642 -11.94252 -11.74907 -11.57235 -11.16556 -9.68454 -9.58946 -9.36487 -8.35753 -6.60485 0.82234 1.13900 1.41484 1.54335 1.56977 2.22035 2.45568 2.80703 3.87028 4.08726 4.12148 4.20247 4.38732 4.52062 4.57919 4.80161 4.91547 4.95639 5.15018 5.21576 5.30965 5.52265 5.65090 5.77048 6.20776 6.55291 6.77724 6.91791 8.14373 8.41159 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.079791 B = 0.008750 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.833165 B = 3199.295542 C = 3526.778118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.339 6.339 4 C 0.176 3.824 5 C -0.386 4.386 6 C 0.137 3.863 7 N -0.534 5.534 8 C 0.247 3.753 9 C -0.463 4.463 10 H 0.089 0.911 11 C 0.024 3.976 12 N -0.750 5.750 13 Si 0.993 3.007 14 H -0.262 1.262 15 H -0.264 1.264 16 H -0.255 1.255 17 C -0.338 4.338 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.106 0.894 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.135 0.865 24 H 0.148 0.852 25 H 0.282 0.718 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -3.467 0.247 7.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 O -0.253 6.253 4 C 0.125 3.875 5 C -0.410 4.410 6 C -0.029 4.029 7 N -0.250 5.250 8 C 0.123 3.877 9 C -0.493 4.493 10 H 0.107 0.893 11 C -0.198 4.198 12 N -0.372 5.372 13 Si 0.812 3.188 14 H -0.187 1.187 15 H -0.188 1.188 16 H -0.178 1.178 17 C -0.361 4.361 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.124 0.876 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.152 0.848 24 H 0.166 0.834 25 H 0.093 0.907 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.359 -3.244 0.249 6.269 hybrid contribution -0.501 0.160 0.066 0.530 sum -5.860 -3.084 0.315 6.629 Atomic orbital electron populations 1.21794 0.90759 1.04316 1.03087 1.22996 0.97090 0.81126 1.01681 1.85944 1.19209 1.31276 1.88826 1.19052 0.81940 0.94181 0.92341 1.21670 0.95094 0.97713 1.26548 1.22886 0.92633 0.95679 0.91696 1.68721 1.38089 0.97692 1.20450 1.18810 0.87442 0.93530 0.87912 1.20015 0.93586 0.92107 1.43615 0.89274 1.27067 0.97232 1.03074 0.92454 1.70227 1.05765 1.32695 1.28475 0.85042 0.78069 0.76190 0.79453 1.18691 1.18822 1.17836 1.21188 0.95783 0.94584 1.24549 0.91891 0.91890 0.87587 0.91943 0.91959 0.84774 0.83440 0.90695 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 10.28 71.98 0.74 -2.35 15 2 C 0.05 1.37 5.48 71.98 0.39 1.76 15 3 O -0.34 -14.17 10.15 -90.96 -0.92 -15.09 15 4 C 0.18 8.55 6.73 22.71 0.15 8.71 15 5 C -0.39 -17.59 9.13 22.65 0.21 -17.39 15 6 C 0.14 6.81 11.17 84.81 0.95 7.76 15 7 N -0.53 -30.93 7.89 -189.31 -1.49 -32.43 15 8 C 0.25 14.47 6.54 40.19 0.26 14.73 15 9 C -0.46 -26.13 9.14 23.49 0.21 -25.91 15 10 H 0.09 4.73 7.85 -2.91 -0.02 4.70 15 11 C 0.02 1.25 5.49 85.28 0.47 1.72 15 12 N -0.75 -40.98 11.49 21.83 0.25 -40.73 15 13 Si 0.99 38.42 29.56 68.60 2.03 40.45 15 14 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 15 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 16 H -0.25 -9.51 7.11 99.48 0.71 -8.80 15 17 C -0.34 -18.42 9.80 22.95 0.22 -18.20 15 18 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.06 1.37 8.14 -2.38 -0.02 1.35 15 20 H 0.11 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.06 1.77 7.72 -2.39 -0.02 1.76 15 22 H 0.06 1.77 7.69 -2.39 -0.02 1.75 15 23 H 0.13 5.04 6.44 -2.91 -0.02 5.02 15 24 H 0.15 6.28 8.06 -2.91 -0.02 6.25 15 25 H 0.28 13.74 8.29 -92.71 -0.77 12.97 15 26 H 0.10 5.44 8.06 -2.91 -0.02 5.41 15 Total: -1.00 -66.26 232.71 4.64 -61.62 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.17 Total: 15.35 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.61 Total: -29.16 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.24 Total: -73.16 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.92 Total: -15.09 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -66.26 4.64 -61.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506696.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.845 kcal (2) G-P(sol) polarization free energy of solvation -66.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds