Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00502 * 2 1 4 4 H 1.48503 * 109.47215 * 270.00174 * 3 2 1 5 5 H 1.48509 * 109.46755 * 29.99847 * 3 2 1 6 6 H 1.48495 * 109.47337 * 149.99771 * 3 2 1 7 7 C 1.37880 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00304 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99638 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47214 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00435 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.38615 * 120.07365 * 95.26083 * 12 11 10 14 14 C 1.38880 * 117.96717 * 180.28685 * 13 12 11 15 15 C 1.38611 * 117.96736 * 359.45738 * 14 13 12 16 16 N 1.31938 * 119.84568 * 0.28403 * 15 14 13 17 17 N 1.28349 * 122.18457 * 359.97438 * 16 15 14 18 18 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47223 * 60.00253 * 9 7 2 20 20 H 1.09005 * 109.47370 * 299.99991 * 9 7 2 21 21 H 1.00904 * 110.99632 * 303.95509 * 10 9 7 22 22 H 1.08995 * 109.47365 * 59.99681 * 11 10 9 23 23 H 1.09001 * 109.46627 * 299.99769 * 11 10 9 24 24 H 1.08005 * 121.02224 * 0.02562 * 13 12 11 25 25 H 1.08002 * 121.02028 * 179.74070 * 14 13 12 26 26 H 1.08000 * 120.08030 * 180.29881 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 5.4696 -2.6185 0.0022 12 6 5.9337 -4.0522 0.0026 13 6 6.2532 -4.6793 -1.1915 14 6 6.6703 -6.0030 -1.1409 15 6 6.7523 -6.6116 0.1018 16 7 6.4325 -5.9334 1.1874 17 7 6.0422 -4.7117 1.1401 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6802 0.8911 20 1 3.8752 -0.6805 -0.8889 21 1 3.6252 -3.0956 0.7821 22 1 5.8458 -2.1149 0.8926 23 1 5.8472 -2.1142 -0.8874 24 1 6.1761 -4.1559 -2.1331 25 1 6.9275 -6.5404 -2.0417 26 1 7.0774 -7.6384 0.1813 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236192154.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = 31.378352 kcal Electronic energy + Delta-G solvation = -11170.003329 eV Core-core repulsion = 9055.097214 eV Total energy + Delta-G solvation = -2114.906115 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.91340 -37.45668 -34.89369 -34.02836 -33.37427 -29.84087 -26.76805 -25.49912 -23.59081 -22.97564 -19.08084 -18.36268 -17.77162 -17.08645 -16.32196 -16.08305 -15.79850 -15.19373 -14.54708 -14.37911 -14.02753 -13.44178 -13.32061 -12.73286 -12.50161 -11.91544 -11.75091 -11.50738 -11.12584 -10.88561 -10.80750 -10.59404 -9.27879 -8.30620 -6.36375 -0.07633 -0.00645 1.36698 1.39318 1.50236 2.34755 2.57998 3.03116 3.03882 3.55617 3.67419 3.76850 3.91014 4.14306 4.33655 4.47549 4.65259 4.75962 4.91804 5.04886 5.19517 5.36232 5.48070 5.86295 6.40113 6.53962 6.71027 7.28266 7.77206 8.86318 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.077917 B = 0.007058 C = 0.006924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.272730 B = 3965.940116 C = 4042.657766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.174 3.826 10 N -0.681 5.681 11 C 0.108 3.892 12 C 0.067 3.933 13 C -0.107 4.107 14 C -0.104 4.104 15 C 0.031 3.969 16 N -0.286 5.286 17 N -0.285 5.285 18 H 0.268 0.732 19 H -0.010 1.010 20 H 0.039 0.961 21 H 0.333 0.667 22 H 0.041 0.959 23 H 0.109 0.891 24 H 0.175 0.825 25 H 0.197 0.803 26 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -8.623 -4.761 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.051 0.949 9 C 0.046 3.954 10 N -0.311 5.311 11 C -0.022 4.022 12 C -0.079 4.079 13 C -0.136 4.136 14 C -0.132 4.132 15 C -0.134 4.134 16 N -0.126 5.126 17 N -0.127 5.127 18 H 0.077 0.923 19 H 0.008 0.992 20 H 0.057 0.943 21 H 0.150 0.850 22 H 0.059 0.941 23 H 0.127 0.873 24 H 0.193 0.807 25 H 0.214 0.786 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.402 -8.566 -3.763 18.883 hybrid contribution -0.059 0.881 -0.411 0.974 sum 16.343 -7.686 -4.174 18.536 Atomic orbital electron populations 1.70063 1.08335 1.28360 1.52103 1.25937 0.95693 1.03542 0.93920 0.85587 0.79251 0.77813 0.79490 1.18491 1.20849 1.17216 1.21307 0.91421 0.93394 1.50955 0.94917 1.19815 0.93693 0.86370 0.95509 1.60508 1.05533 1.15393 1.49685 1.20850 0.89037 0.89661 1.02686 1.22877 0.95274 0.98205 0.91557 1.22665 0.94920 0.96247 0.99735 1.22944 0.95017 0.94405 1.00884 1.24976 0.95401 1.03211 0.89852 1.72903 1.08849 1.01039 1.29825 1.72834 1.10654 1.02661 1.26591 0.92275 0.99218 0.94349 0.85033 0.94076 0.87266 0.80744 0.78609 0.77520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 15 2 C 0.01 0.39 5.47 84.66 0.46 0.85 15 3 Si 0.96 43.71 27.47 68.60 1.88 45.59 15 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.25 -10.56 6.54 99.48 0.65 -9.90 15 7 C -0.53 -31.35 9.87 25.60 0.25 -31.10 15 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 15 9 C 0.17 8.31 4.51 85.56 0.39 8.70 15 10 N -0.68 -28.51 6.48 -521.99 -3.38 -31.90 15 11 C 0.11 3.52 6.02 85.56 0.52 4.04 15 12 C 0.07 2.01 6.38 42.63 0.27 2.28 15 13 C -0.11 -2.31 9.85 22.51 0.22 -2.08 15 14 C -0.10 -1.66 10.21 22.51 0.23 -1.43 15 15 C 0.03 0.60 11.31 84.77 0.96 1.56 15 16 N -0.29 -8.68 11.50 -57.25 -0.66 -9.33 15 17 N -0.29 -9.82 11.43 -47.63 -0.54 -10.37 15 18 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 19 H -0.01 -0.47 7.20 -2.39 -0.02 -0.48 15 20 H 0.04 1.73 7.57 -2.38 -0.02 1.72 15 21 H 0.33 14.83 8.71 -89.69 -0.78 14.05 15 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.11 2.98 8.05 -2.39 -0.02 2.96 15 24 H 0.18 2.83 8.06 -2.91 -0.02 2.81 15 25 H 0.20 1.19 8.06 -2.91 -0.02 1.17 15 26 H 0.21 2.19 8.06 -2.91 -0.02 2.17 15 Total: -1.00 -73.63 235.44 1.24 -72.39 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.34 Total: 10.34 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 3.30 Total: -17.18 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.29 Total: -111.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -73.63 1.24 -72.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236192154.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.767 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds