Wall clock time and date at job start Mon Mar 30 2020 01:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35916 * 116.99844 * 2 1 4 4 C 1.39147 * 120.34354 * 359.97438 * 3 2 1 5 5 N 1.32014 * 121.23755 * 179.69995 * 4 3 2 6 6 C 1.31490 * 122.03506 * 0.28001 * 5 4 3 7 7 C 1.40752 * 120.52351 * 359.97438 * 6 5 4 8 8 C 1.41418 * 120.62996 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99340 * 155.76317 * 8 7 6 10 10 C 1.39937 * 120.00242 * 335.76003 * 8 7 6 11 11 N 1.30832 * 119.99597 * 342.00811 * 10 8 7 12 12 Si 1.86800 * 120.00131 * 162.00761 * 10 8 7 13 13 H 1.48498 * 109.46750 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47027 * 119.99846 * 12 10 8 15 15 H 1.48500 * 109.46721 * 240.00252 * 12 10 8 16 16 C 1.38485 * 120.34477 * 180.25374 * 3 2 1 17 17 C 1.50699 * 120.92305 * 0.02562 * 16 3 2 18 18 H 1.08996 * 109.47257 * 299.99912 * 1 2 3 19 19 H 1.09004 * 109.47539 * 60.00552 * 1 2 3 20 20 H 1.09007 * 109.46854 * 180.02562 * 1 2 3 21 21 H 1.08001 * 119.38375 * 359.97438 * 4 3 2 22 22 H 1.08005 * 119.74191 * 180.02562 * 6 5 4 23 23 H 0.97003 * 119.99109 * 180.02562 * 11 10 8 24 24 H 1.09001 * 109.47495 * 270.28232 * 17 16 3 25 25 H 1.09004 * 109.47111 * 30.28212 * 17 16 3 26 26 H 1.08994 * 109.47443 * 150.28114 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2951 2.3825 -0.0005 5 7 1.8760 3.5680 0.0054 6 6 3.1838 3.7039 0.0066 7 6 4.0202 2.5718 0.0020 8 6 5.4270 2.7153 0.0028 9 1 6.0507 1.9200 0.3836 10 6 6.0111 3.8876 -0.4899 11 7 5.3204 4.6890 -1.2597 12 14 7.7767 4.3084 -0.0486 13 1 8.3337 3.2479 0.8290 14 1 8.5881 4.4020 -1.2888 15 1 7.8117 5.6101 0.6653 16 6 3.4285 1.2919 -0.0053 17 6 4.2770 0.0465 -0.0117 18 1 -0.3633 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.2169 2.3208 -0.0014 22 1 3.6199 4.6920 0.0119 23 1 5.7254 5.5014 -1.6015 24 1 4.4815 -0.2592 1.0144 25 1 3.7461 -0.7522 -0.5298 26 1 5.2171 0.2500 -0.5244 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238345607.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:27 Heat of formation + Delta-G solvation = -43.277880 kcal Electronic energy + Delta-G solvation = -11799.611245 eV Core-core repulsion = 9649.175042 eV Total energy + Delta-G solvation = -2150.436203 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.94070 -38.65072 -35.86199 -34.12804 -31.04998 -28.51822 -28.31223 -26.91133 -23.14037 -22.30517 -19.60159 -18.15472 -17.23205 -16.74922 -16.58957 -16.51683 -14.89095 -14.82732 -14.41713 -13.59481 -13.49394 -13.33544 -13.13776 -12.89978 -12.75205 -12.39306 -12.18842 -12.07610 -11.80653 -11.20070 -9.95391 -9.67788 -8.97269 -8.77183 -6.48738 0.79057 0.95206 1.41960 1.53254 1.59003 2.18937 2.61819 2.69271 3.63944 4.13961 4.31487 4.44787 4.45202 4.55478 4.72894 4.77267 4.90839 4.97665 5.11583 5.17904 5.42282 5.60510 5.75385 5.97790 6.33299 6.54096 6.75839 6.83314 7.73110 8.21856 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.061604 B = 0.011302 C = 0.009828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.407764 B = 2476.879715 C = 2848.352639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C 0.101 3.899 4 C -0.131 4.131 5 N -0.470 5.470 6 C -0.012 4.012 7 C 0.066 3.934 8 C -0.464 4.464 9 H 0.093 0.907 10 C 0.035 3.965 11 N -0.813 5.813 12 Si 0.992 3.008 13 H -0.252 1.252 14 H -0.264 1.264 15 H -0.263 1.263 16 C -0.230 4.230 17 C -0.065 4.065 18 H 0.055 0.945 19 H 0.053 0.947 20 H 0.125 0.875 21 H 0.149 0.851 22 H 0.137 0.863 23 H 0.296 0.704 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -4.847 1.631 5.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.245 6.245 3 C 0.054 3.946 4 C -0.285 4.285 5 N -0.179 5.179 6 C -0.177 4.177 7 C 0.062 3.938 8 C -0.492 4.492 9 H 0.111 0.889 10 C -0.182 4.182 11 N -0.438 5.438 12 Si 0.812 3.188 13 H -0.175 1.175 14 H -0.188 1.188 15 H -0.188 1.188 16 C -0.238 4.238 17 C -0.121 4.121 18 H 0.074 0.926 19 H 0.071 0.929 20 H 0.143 0.857 21 H 0.166 0.834 22 H 0.154 0.846 23 H 0.107 0.893 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.190 -4.156 1.482 4.570 hybrid contribution 0.655 -0.076 -0.062 0.663 sum -0.535 -4.232 1.420 4.496 Atomic orbital electron populations 1.23216 0.77365 1.05064 1.01525 1.85936 1.22773 1.26613 1.89178 1.19650 0.92442 0.85059 0.97426 1.22266 0.99311 0.87459 1.19495 1.66957 1.13903 1.27206 1.09879 1.22776 0.87606 0.99102 1.08203 1.18578 0.95482 0.90742 0.89042 1.19887 0.91264 1.02460 1.35613 0.88863 1.26985 1.05493 0.94322 0.91413 1.69858 1.40905 1.11281 1.21737 0.84998 0.75100 0.79363 0.79347 1.17550 1.18829 1.18797 1.19940 0.90863 0.96422 1.16582 1.20130 0.98080 0.93168 1.00754 0.92604 0.92859 0.85673 0.83357 0.84560 0.89347 0.92653 0.92407 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.82 113.37 1.11 1.75 15 2 O -0.33 -13.24 9.66 -92.61 -0.89 -14.13 15 3 C 0.10 4.82 6.67 22.55 0.15 4.97 15 4 C -0.13 -6.39 10.22 84.88 0.87 -5.52 15 5 N -0.47 -25.59 10.33 -193.19 -2.00 -27.58 15 6 C -0.01 -0.67 9.89 85.36 0.84 0.17 15 7 C 0.07 3.65 5.58 -21.20 -0.12 3.53 15 8 C -0.46 -24.00 8.23 23.47 0.19 -23.81 15 9 H 0.09 4.54 6.93 -2.91 -0.02 4.52 15 10 C 0.04 1.70 5.15 85.25 0.44 2.13 15 11 N -0.81 -41.49 10.98 21.83 0.24 -41.25 15 12 Si 0.99 35.99 29.60 68.60 2.03 38.02 15 13 H -0.25 -8.84 7.11 99.48 0.71 -8.14 15 14 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 15 H -0.26 -9.24 7.11 99.48 0.71 -8.54 15 16 C -0.23 -11.68 5.99 -19.13 -0.11 -11.80 15 17 C -0.06 -2.76 9.28 71.24 0.66 -2.09 15 18 H 0.06 1.49 7.67 -2.39 -0.02 1.47 15 19 H 0.05 1.45 7.67 -2.38 -0.02 1.43 15 20 H 0.13 2.53 8.14 -2.38 -0.02 2.51 15 21 H 0.15 6.13 6.29 -2.91 -0.02 6.12 15 22 H 0.14 7.89 6.16 -2.91 -0.02 7.87 15 23 H 0.30 13.42 8.30 -92.71 -0.77 12.65 15 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.06 2.27 7.62 -2.38 -0.02 2.25 15 26 H 0.06 2.49 6.87 -2.39 -0.02 2.47 15 Total: -1.00 -61.87 226.52 4.60 -57.27 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.19 Total: 18.34 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.04 Total: -30.66 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.76 Total: -68.84 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.89 Total: -14.13 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -61.87 4.60 -57.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238345607.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.988 kcal (2) G-P(sol) polarization free energy of solvation -61.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds