Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36020 * 116.99938 * 2 1 4 4 C 1.38537 * 120.03459 * 359.97438 * 3 2 1 5 5 C 1.38874 * 120.57332 * 180.02562 * 4 3 2 6 6 C 1.36436 * 120.64026 * 359.97438 * 5 4 3 7 7 C 1.40784 * 120.04393 * 0.02562 * 6 5 4 8 8 C 1.41066 * 120.28299 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99809 * 154.29010 * 8 7 6 10 10 C 1.39911 * 120.00088 * 334.28333 * 8 7 6 11 11 N 1.30890 * 119.99702 * 342.92239 * 10 8 7 12 12 Si 1.86798 * 119.99941 * 162.92161 * 10 8 7 13 13 H 1.48505 * 109.47036 * 94.64055 * 12 10 8 14 14 H 1.48506 * 109.46943 * 214.63584 * 12 10 8 15 15 H 1.48492 * 109.47337 * 334.63931 * 12 10 8 16 16 C 1.39185 * 120.03459 * 179.97438 * 3 2 1 17 17 N 1.38992 * 120.30702 * 0.25524 * 16 3 2 18 18 H 1.08997 * 109.47310 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47157 * 300.00575 * 1 2 3 20 20 H 1.08995 * 109.46904 * 60.00066 * 1 2 3 21 21 H 1.07999 * 119.71238 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.67888 * 179.97438 * 5 4 3 23 23 H 1.07996 * 119.97716 * 179.97438 * 6 5 4 24 24 H 0.97009 * 119.99686 * 179.97438 * 11 10 8 25 25 H 0.97001 * 119.99115 * 179.72153 * 17 16 3 26 26 H 0.96990 * 119.99864 * 359.71949 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2927 2.3743 -0.0005 5 6 1.9115 3.6175 -0.0011 6 6 3.2722 3.7170 -0.0006 7 6 4.0640 2.5529 0.0000 8 6 5.4713 2.6498 0.0000 9 1 6.0680 1.8463 0.4061 10 6 6.0943 3.7867 -0.5263 11 7 5.4258 4.5966 -1.3076 12 14 7.8798 4.1487 -0.1138 13 1 8.7553 3.6005 -1.1808 14 1 8.0776 5.6174 -0.0173 15 1 8.2261 3.5162 1.1842 16 6 3.4364 1.2856 0.0005 17 7 4.2004 0.1245 -0.0043 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 0.2144 2.3130 -0.0005 22 1 1.3097 4.5144 -0.0019 23 1 3.7422 4.6893 -0.0014 24 1 5.8576 5.3851 -1.6722 25 1 5.1687 0.1812 -0.0080 26 1 3.7652 -0.7423 -0.0039 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238367072.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = -40.681000 kcal Electronic energy + Delta-G solvation = -11790.398098 eV Core-core repulsion = 9640.074504 eV Total energy + Delta-G solvation = -2150.323594 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.50372 -38.13878 -35.17098 -34.85265 -30.93803 -29.29041 -27.91389 -26.69222 -22.61019 -22.15272 -19.45176 -17.83485 -17.69396 -17.02967 -16.50318 -16.29375 -15.60115 -14.94302 -14.47309 -13.94883 -13.69385 -13.42324 -12.88107 -12.74507 -12.32563 -12.06981 -11.79947 -11.63500 -11.28315 -11.04132 -10.89570 -9.01646 -8.57674 -7.85581 -6.08991 1.00633 1.33219 1.42447 1.52487 1.57974 2.25817 2.76874 2.83169 3.65105 3.81778 4.41568 4.51873 4.58416 4.67526 4.80091 5.04290 5.17469 5.36958 5.45285 5.77365 5.95253 6.09966 6.22822 6.61609 6.78043 6.96616 7.00214 7.37114 7.55893 8.45275 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.061849 B = 0.011257 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.603716 B = 2486.820383 C = 2860.018138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.344 6.344 3 C 0.050 3.950 4 C -0.272 4.272 5 C -0.128 4.128 6 C -0.185 4.185 7 C 0.053 3.947 8 C -0.490 4.490 9 H 0.078 0.922 10 C 0.033 3.967 11 N -0.833 5.833 12 Si 0.981 3.019 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.259 1.259 16 C 0.073 3.927 17 N -0.871 5.871 18 H 0.118 0.882 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.124 0.876 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.284 0.716 25 H 0.393 0.607 26 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 -4.212 1.817 5.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.259 6.259 3 C 0.002 3.998 4 C -0.292 4.292 5 C -0.148 4.148 6 C -0.206 4.206 7 C 0.048 3.952 8 C -0.521 4.521 9 H 0.096 0.904 10 C -0.180 4.180 11 N -0.460 5.460 12 Si 0.803 3.197 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.183 1.183 16 C -0.029 4.029 17 N -0.416 5.416 18 H 0.136 0.864 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.142 0.858 22 H 0.126 0.874 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.222 0.778 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.035 -4.124 1.671 5.386 hybrid contribution 0.581 0.312 -0.062 0.662 sum -2.454 -3.813 1.610 4.811 Atomic orbital electron populations 1.23064 0.77976 1.04326 1.01078 1.85826 1.22230 1.27198 1.90693 1.18305 0.90213 0.84531 1.06789 1.20579 0.98561 0.91701 1.18373 1.20334 0.94529 0.96404 1.03501 1.20772 0.93013 0.98077 1.08699 1.17424 0.94209 0.89303 0.94306 1.19400 0.91539 1.04037 1.37096 0.90387 1.26659 1.04599 0.94689 0.92049 1.69938 1.40330 1.12413 1.23361 0.85208 0.76660 0.78208 0.79649 1.18992 1.19555 1.18292 1.17525 0.87486 0.88510 1.09348 1.41545 1.07645 1.04215 1.88171 0.86415 0.93040 0.93311 0.85822 0.87360 0.88111 0.90565 0.77846 0.78010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.81 113.37 1.11 1.98 15 2 O -0.34 -13.73 9.74 -93.77 -0.91 -14.65 15 3 C 0.05 2.35 6.70 22.57 0.15 2.50 15 4 C -0.27 -12.33 9.04 22.49 0.20 -12.13 15 5 C -0.13 -6.20 9.96 22.00 0.22 -5.98 15 6 C -0.18 -10.10 8.63 22.47 0.19 -9.91 15 7 C 0.05 2.92 5.57 -21.18 -0.12 2.80 15 8 C -0.49 -26.37 8.49 23.37 0.20 -26.17 15 9 H 0.08 3.95 6.71 -2.91 -0.02 3.94 15 10 C 0.03 1.71 5.14 85.24 0.44 2.14 15 11 N -0.83 -44.66 10.99 21.82 0.24 -44.42 15 12 Si 0.98 38.72 29.59 68.60 2.03 40.75 15 13 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 14 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 16 C 0.07 3.72 6.81 39.02 0.27 3.99 15 17 N -0.87 -37.61 8.98 -50.05 -0.45 -38.06 15 18 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 19 H 0.05 1.40 7.66 -2.39 -0.02 1.38 15 20 H 0.05 1.35 7.66 -2.39 -0.02 1.33 15 21 H 0.12 4.73 6.26 -2.91 -0.02 4.71 15 22 H 0.11 4.63 8.06 -2.91 -0.02 4.61 15 23 H 0.10 5.73 6.21 -2.91 -0.02 5.71 15 24 H 0.28 13.82 8.30 -92.70 -0.77 13.05 15 25 H 0.39 16.30 7.07 -92.71 -0.66 15.65 15 26 H 0.39 14.96 8.19 -92.72 -0.76 14.20 15 Total: -1.00 -61.72 225.03 3.37 -58.34 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.20 Total: 38.81 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 2.66 Total: -40.78 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -0.21 Total: -82.48 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.91 Total: -14.65 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -61.72 3.37 -58.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238367072.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.661 kcal (2) G-P(sol) polarization free energy of solvation -61.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds