Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 116.99867 * 2 1 4 4 C 1.39010 * 119.89596 * 0.02562 * 3 2 1 5 5 C 1.39195 * 120.37056 * 180.02562 * 4 3 2 6 6 N 1.39677 * 119.92402 * 179.97438 * 5 4 3 7 7 C 1.38357 * 120.15513 * 359.94980 * 5 4 3 8 8 C 1.40603 * 119.78382 * 0.02899 * 7 5 4 9 9 C 1.41417 * 120.18041 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99533 * 330.20848 * 9 8 7 11 11 C 1.39914 * 119.99882 * 150.20838 * 9 8 7 12 12 N 1.30837 * 119.99907 * 161.68956 * 11 9 8 13 13 Si 1.86808 * 120.00242 * 341.69325 * 11 9 8 14 14 H 1.48504 * 109.46788 * 95.40852 * 13 11 9 15 15 H 1.48494 * 109.47013 * 215.40815 * 13 11 9 16 16 H 1.48500 * 109.46897 * 335.40892 * 13 11 9 17 17 C 1.38164 * 119.89178 * 180.02562 * 3 2 1 18 18 H 1.09002 * 109.46873 * 299.99723 * 1 2 3 19 19 H 1.08995 * 109.47618 * 59.99734 * 1 2 3 20 20 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 21 21 H 1.08002 * 119.81393 * 0.02562 * 4 3 2 22 22 H 0.96996 * 120.00222 * 179.97438 * 6 5 4 23 23 H 0.97009 * 119.99756 * 359.97438 * 6 5 4 24 24 H 1.08001 * 120.10642 * 180.02562 * 7 5 4 25 25 H 0.97002 * 119.99521 * 179.97438 * 12 11 9 26 26 H 1.08003 * 120.07784 * 0.25117 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2866 2.3753 0.0005 5 6 1.9083 3.6208 0.0000 6 7 1.1363 4.7848 0.0000 7 6 3.2891 3.7084 0.0000 8 6 4.0634 2.5348 -0.0001 9 6 5.4753 2.6146 0.0004 10 1 5.9687 3.4556 -0.4639 11 6 6.2328 1.6040 0.6024 12 7 7.5010 1.4736 0.3081 13 14 5.4336 0.4406 1.8262 14 1 5.0066 -0.7974 1.1260 15 1 6.4094 0.0956 2.8910 16 1 4.2495 1.0990 2.4342 17 6 3.4258 1.2806 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 0.2084 2.3133 0.0014 22 1 1.5682 5.6533 0.0000 23 1 0.1680 4.7247 0.0000 24 1 3.7705 4.6751 0.0000 25 1 8.0262 0.7732 0.7258 26 1 4.0135 0.3745 -0.0051 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238376164.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = -25.556129 kcal Electronic energy + Delta-G solvation = -11754.603941 eV Core-core repulsion = 9604.936210 eV Total energy + Delta-G solvation = -2149.667730 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.93813 -36.73898 -34.25350 -32.52206 -29.57805 -28.09839 -26.41377 -24.85284 -21.11820 -20.51004 -17.74906 -16.45599 -16.20512 -15.02396 -14.95539 -14.62824 -14.48773 -13.87528 -12.99634 -12.29816 -12.12303 -11.92495 -11.12412 -10.88721 -10.85656 -10.78365 -10.37301 -9.92688 -9.61817 -9.26011 -8.68971 -7.32975 -6.88231 -6.46359 -4.47461 2.72016 2.95341 3.27327 3.33160 3.46376 4.11956 4.14281 4.59648 4.69270 5.50847 5.56964 5.64185 5.80610 6.20555 6.44408 6.58191 6.81523 6.99757 7.19135 7.30829 7.63593 7.65703 7.99525 8.19530 8.37276 8.48534 8.66664 8.79642 8.91547 10.13741 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.015545 C = 0.011521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.507434 B = 1800.743850 C = 2429.739452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.185 3.815 4 C -0.380 4.380 5 C 0.262 3.738 6 N -0.890 5.890 7 C -0.305 4.305 8 C 0.151 3.849 9 C -0.446 4.446 10 H 0.092 0.908 11 C 0.087 3.913 12 N -0.809 5.809 13 Si 0.915 3.085 14 H -0.269 1.269 15 H -0.294 1.294 16 H -0.245 1.245 17 C -0.301 4.301 18 H 0.046 0.954 19 H 0.047 0.953 20 H 0.084 0.916 21 H 0.099 0.901 22 H 0.389 0.611 23 H 0.384 0.616 24 H 0.099 0.901 25 H 0.285 0.715 26 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 0.171 1.194 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C 0.140 3.860 4 C -0.404 4.404 5 C 0.160 3.840 6 N -0.430 5.430 7 C -0.330 4.330 8 C 0.147 3.853 9 C -0.474 4.474 10 H 0.110 0.890 11 C -0.132 4.132 12 N -0.432 5.432 13 Si 0.742 3.258 14 H -0.195 1.195 15 H -0.222 1.222 16 H -0.168 1.168 17 C -0.321 4.321 18 H 0.065 0.935 19 H 0.066 0.934 20 H 0.103 0.897 21 H 0.117 0.883 22 H 0.216 0.784 23 H 0.210 0.790 24 H 0.117 0.883 25 H 0.095 0.905 26 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.457 -0.176 1.196 9.534 hybrid contribution -0.680 -0.072 0.466 0.828 sum -10.137 -0.248 1.662 10.276 Atomic orbital electron populations 1.22791 0.80386 1.02055 1.00739 1.86013 1.19930 1.28992 1.89416 1.18497 0.91713 0.82292 0.93470 1.19834 0.97146 0.91078 1.32293 1.17251 0.90553 0.85331 0.90894 1.42380 1.07497 1.05776 1.87353 1.20345 0.90395 0.97756 1.24481 1.17166 0.93075 0.89544 0.85549 1.19442 0.89458 1.06640 1.31850 0.89037 1.26169 0.94620 0.96221 0.96186 1.69712 1.08522 1.29489 1.35526 0.86248 0.79470 0.80424 0.79643 1.19453 1.22218 1.16779 1.20185 0.90269 0.97870 1.23819 0.93514 0.93434 0.89725 0.88345 0.78369 0.78952 0.88308 0.90491 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.81 101.05 0.99 1.55 15 2 O -0.33 -7.10 10.49 -19.42 -0.20 -7.30 15 3 C 0.19 4.43 6.67 -39.32 -0.26 4.17 15 4 C -0.38 -8.29 8.89 -38.94 -0.35 -8.64 15 5 C 0.26 5.67 6.74 -83.88 -0.57 5.11 15 6 N -0.89 -14.60 9.09 32.36 0.29 -14.30 15 7 C -0.31 -7.41 9.63 -38.65 -0.37 -7.78 15 8 C 0.15 4.02 5.10 -106.87 -0.55 3.48 15 9 C -0.45 -12.47 9.57 -37.75 -0.36 -12.83 15 10 H 0.09 2.64 8.06 -52.49 -0.42 2.22 15 11 C 0.09 2.37 5.40 -17.35 -0.09 2.28 15 12 N -0.81 -22.10 13.93 55.55 0.77 -21.33 15 13 Si 0.92 22.16 24.52 -169.99 -4.17 18.00 15 14 H -0.27 -6.47 6.71 56.52 0.38 -6.09 15 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 16 H -0.24 -6.13 6.87 56.52 0.39 -5.74 15 17 C -0.30 -7.89 7.09 -38.68 -0.27 -8.17 15 18 H 0.05 0.68 7.65 -51.93 -0.40 0.28 15 19 H 0.05 0.69 7.65 -51.93 -0.40 0.29 15 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.10 1.86 6.26 -52.49 -0.33 1.53 15 22 H 0.39 5.61 8.84 -40.82 -0.36 5.25 15 23 H 0.38 5.28 8.84 -40.82 -0.36 4.92 15 24 H 0.10 2.27 8.06 -52.49 -0.42 1.85 15 25 H 0.28 7.05 8.30 -40.82 -0.34 6.72 15 26 H 0.11 2.83 4.75 -52.48 -0.25 2.58 15 LS Contribution 224.14 15.07 3.38 3.38 Total: -1.00 -30.05 224.14 -4.29 -34.34 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.53 Total: 8.06 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.83 Total: -20.84 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 1.07 Total: -35.63 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.20 Total: -7.30 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.17 Total: 18.00 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.05 -4.29 -34.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238376164.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.783 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds