Wall clock time and date at job start Mon Mar 30 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 116.99867 * 2 1 4 4 C 1.39010 * 119.89596 * 0.02562 * 3 2 1 5 5 C 1.39195 * 120.37056 * 180.02562 * 4 3 2 6 6 N 1.39677 * 119.92402 * 179.97438 * 5 4 3 7 7 C 1.38357 * 120.15513 * 359.94980 * 5 4 3 8 8 C 1.40603 * 119.78382 * 0.02899 * 7 5 4 9 9 C 1.41417 * 120.18041 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99533 * 330.20848 * 9 8 7 11 11 C 1.39914 * 119.99882 * 150.20838 * 9 8 7 12 12 N 1.30837 * 119.99907 * 161.68956 * 11 9 8 13 13 Si 1.86808 * 120.00242 * 341.69325 * 11 9 8 14 14 H 1.48504 * 109.46788 * 95.40852 * 13 11 9 15 15 H 1.48494 * 109.47013 * 215.40815 * 13 11 9 16 16 H 1.48500 * 109.46897 * 335.40892 * 13 11 9 17 17 C 1.38164 * 119.89178 * 180.02562 * 3 2 1 18 18 H 1.09002 * 109.46873 * 299.99723 * 1 2 3 19 19 H 1.08995 * 109.47618 * 59.99734 * 1 2 3 20 20 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 21 21 H 1.08002 * 119.81393 * 0.02562 * 4 3 2 22 22 H 0.96996 * 120.00222 * 179.97438 * 6 5 4 23 23 H 0.97009 * 119.99756 * 359.97438 * 6 5 4 24 24 H 1.08001 * 120.10642 * 180.02562 * 7 5 4 25 25 H 0.97002 * 119.99521 * 179.97438 * 12 11 9 26 26 H 1.08003 * 120.07784 * 0.25117 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2866 2.3753 0.0005 5 6 1.9083 3.6208 0.0000 6 7 1.1363 4.7848 0.0000 7 6 3.2891 3.7084 0.0000 8 6 4.0634 2.5348 -0.0001 9 6 5.4753 2.6146 0.0004 10 1 5.9687 3.4556 -0.4639 11 6 6.2328 1.6040 0.6024 12 7 7.5010 1.4736 0.3081 13 14 5.4336 0.4406 1.8262 14 1 5.0066 -0.7974 1.1260 15 1 6.4094 0.0956 2.8910 16 1 4.2495 1.0990 2.4342 17 6 3.4258 1.2806 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 0.2084 2.3133 0.0014 22 1 1.5682 5.6533 0.0000 23 1 0.1680 4.7247 0.0000 24 1 3.7705 4.6751 0.0000 25 1 8.0262 0.7732 0.7258 26 1 4.0135 0.3745 -0.0051 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238376164.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:27 Heat of formation + Delta-G solvation = -47.899493 kcal Electronic energy + Delta-G solvation = -11755.572822 eV Core-core repulsion = 9604.936210 eV Total energy + Delta-G solvation = -2150.636611 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.65236 -38.44093 -36.09095 -34.36123 -31.41280 -29.68584 -27.99840 -26.68867 -22.91792 -22.33398 -19.57096 -18.28658 -17.79480 -16.87359 -16.48420 -16.36177 -16.09694 -15.55285 -14.91673 -14.00296 -13.88759 -13.66489 -12.87384 -12.77817 -12.58403 -12.28421 -12.13151 -11.81246 -11.55522 -11.15928 -10.49116 -9.14854 -8.90694 -8.16971 -6.55326 0.83178 1.08190 1.31439 1.42087 1.51785 2.17669 2.58740 2.67149 3.24669 3.57097 4.40764 4.47572 4.47912 4.67715 4.69815 4.77035 4.96035 5.17227 5.31750 5.55283 5.76298 5.81199 6.06393 6.29725 6.61041 6.65972 6.86385 7.01705 7.27083 8.17402 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.015545 C = 0.011521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.507434 B = 1800.743850 C = 2429.739452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.184 3.816 4 C -0.369 4.369 5 C 0.272 3.728 6 N -0.867 5.867 7 C -0.326 4.326 8 C 0.136 3.864 9 C -0.482 4.482 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.845 5.845 13 Si 0.968 3.032 14 H -0.270 1.270 15 H -0.274 1.274 16 H -0.258 1.258 17 C -0.332 4.332 18 H 0.059 0.941 19 H 0.061 0.939 20 H 0.118 0.882 21 H 0.137 0.863 22 H 0.402 0.598 23 H 0.404 0.596 24 H 0.102 0.898 25 H 0.294 0.706 26 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 0.071 1.724 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.262 6.262 3 C 0.138 3.862 4 C -0.392 4.392 5 C 0.167 3.833 6 N -0.408 5.408 7 C -0.351 4.351 8 C 0.133 3.867 9 C -0.512 4.512 10 H 0.081 0.919 11 C -0.160 4.160 12 N -0.471 5.471 13 Si 0.793 3.207 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.182 1.182 17 C -0.353 4.353 18 H 0.078 0.922 19 H 0.080 0.920 20 H 0.136 0.864 21 H 0.155 0.845 22 H 0.231 0.769 23 H 0.233 0.767 24 H 0.120 0.880 25 H 0.105 0.895 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.642 -0.240 1.723 12.762 hybrid contribution -0.003 0.029 0.232 0.233 sum -12.645 -0.211 1.955 12.797 Atomic orbital electron populations 1.23236 0.76975 1.04904 1.01971 1.85991 1.23390 1.27878 1.88949 1.18589 0.91273 0.83977 0.92321 1.20237 0.98995 0.90186 1.29822 1.17296 0.89974 0.87126 0.88936 1.42256 1.08326 1.04813 1.85359 1.20475 0.91878 0.97206 1.25521 1.17293 0.92715 0.90864 0.85831 1.19451 0.90662 1.06824 1.34260 0.91911 1.26726 0.94966 0.97218 0.97099 1.69723 1.09392 1.30917 1.37047 0.85443 0.78470 0.78560 0.78218 1.19583 1.20054 1.18235 1.20179 0.91822 0.97079 1.26204 0.92188 0.92044 0.86395 0.84533 0.76895 0.76702 0.88016 0.89528 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 15 2 O -0.35 -14.04 10.49 -92.41 -0.97 -15.01 15 3 C 0.18 8.44 6.67 22.44 0.15 8.59 15 4 C -0.37 -14.70 8.89 22.69 0.20 -14.50 15 5 C 0.27 10.97 6.74 38.15 0.26 11.23 15 6 N -0.87 -24.72 9.09 -51.53 -0.47 -25.19 15 7 C -0.33 -15.67 9.63 22.88 0.22 -15.45 15 8 C 0.14 7.44 5.10 -21.32 -0.11 7.33 15 9 C -0.48 -28.36 9.57 23.46 0.22 -28.13 15 10 H 0.06 3.89 8.06 -2.91 -0.02 3.87 15 11 C 0.06 3.12 5.40 85.25 0.46 3.58 15 12 N -0.84 -47.91 13.93 21.82 0.30 -47.60 15 13 Si 0.97 46.74 24.52 68.60 1.68 48.42 15 14 H -0.27 -12.90 6.71 99.48 0.67 -12.23 15 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 16 H -0.26 -12.89 6.87 99.48 0.68 -12.20 15 17 C -0.33 -17.48 7.09 22.85 0.16 -17.32 15 18 H 0.06 1.44 7.65 -2.39 -0.02 1.42 15 19 H 0.06 1.47 7.65 -2.39 -0.02 1.45 15 20 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 21 H 0.14 4.35 6.26 -2.91 -0.02 4.34 15 22 H 0.40 10.04 8.84 -92.71 -0.82 9.22 15 23 H 0.40 8.91 8.84 -92.70 -0.82 8.09 15 24 H 0.10 4.69 8.06 -2.91 -0.02 4.67 15 25 H 0.29 14.98 8.30 -92.71 -0.77 14.21 15 26 H 0.09 4.96 4.75 -2.91 -0.01 4.95 15 Total: -1.00 -66.35 224.14 2.74 -63.61 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.49 Total: 18.72 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 2.68 Total: -42.95 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.16 Total: -72.79 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.97 Total: -15.01 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.68 Total: 48.42 kcal Total: -66.35 2.74 -63.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238376164.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.709 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds