Wall clock time and date at job start Mon Mar 30 2020 01:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35771 * 116.99975 * 2 1 4 4 C 1.38834 * 120.75937 * 359.97438 * 3 2 1 5 5 C 1.40432 * 118.90100 * 180.02562 * 4 3 2 6 6 C 1.41446 * 119.80121 * 179.97438 * 5 4 3 7 7 H 1.08007 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.40014 * 120.00189 * 179.97438 * 6 5 4 9 9 N 1.30752 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00207 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46965 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46692 * 120.00443 * 10 8 6 13 13 H 1.48502 * 109.47270 * 240.00291 * 10 8 6 14 14 N 1.33696 * 120.39620 * 359.72586 * 5 4 3 15 15 C 1.31475 * 121.65114 * 0.56596 * 14 5 4 16 16 C 1.38579 * 121.07931 * 359.43156 * 15 14 5 17 17 C 1.50700 * 120.25031 * 180.25758 * 16 15 14 18 18 H 1.09005 * 109.47483 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47217 * 300.00387 * 1 2 3 20 20 H 1.09000 * 109.47649 * 60.00008 * 1 2 3 21 21 H 1.07992 * 120.55155 * 0.04001 * 4 3 2 22 22 H 0.96997 * 120.00226 * 179.97438 * 9 8 6 23 23 H 1.08002 * 119.46322 * 179.71598 * 15 14 5 24 24 H 1.09003 * 109.46972 * 90.00634 * 17 16 15 25 25 H 1.08994 * 109.46726 * 209.99885 * 17 16 15 26 26 H 1.09000 * 109.47302 * 330.00353 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3047 2.3840 -0.0005 5 6 1.9825 3.6139 -0.0011 6 6 1.2468 4.8220 -0.0022 7 1 0.1670 4.7968 -0.0022 8 6 1.9182 6.0506 -0.0021 9 7 3.2254 6.0813 -0.0016 10 14 0.9466 7.6461 -0.0043 11 1 -0.5066 7.3406 -0.0052 12 1 1.2858 8.4337 1.2081 13 1 1.2884 8.4322 -1.2170 14 7 3.3189 3.6498 0.0045 15 6 4.0387 2.5496 -0.0005 16 6 3.4371 1.3012 0.0000 17 6 4.2802 0.0521 0.0000 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 0.2252 2.3522 -0.0003 22 1 3.6906 6.9324 -0.0020 23 1 5.1164 2.6198 -0.0004 24 1 4.4837 -0.2488 1.0278 25 1 3.7457 -0.7470 -0.5134 26 1 5.2210 0.2488 -0.5141 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238393045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:33 Heat of formation + Delta-G solvation = -34.876012 kcal Electronic energy + Delta-G solvation = -11712.207167 eV Core-core repulsion = 9562.135297 eV Total energy + Delta-G solvation = -2150.071871 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84262 -38.64234 -35.61621 -33.30566 -31.64763 -29.20965 -28.28332 -25.92476 -23.26049 -22.39941 -19.84274 -18.00368 -17.31606 -16.60116 -16.54326 -15.60538 -15.08953 -14.78262 -14.40840 -14.12355 -13.39232 -13.22979 -12.97599 -12.78373 -12.63222 -12.49091 -12.20984 -12.04892 -11.51912 -11.12351 -9.62245 -9.55219 -9.17311 -8.32734 -6.55774 0.82618 1.14965 1.40199 1.52192 1.56198 2.21680 2.55210 2.80849 3.87371 4.17169 4.36553 4.39619 4.47922 4.62377 4.67891 4.87180 4.89440 5.01641 5.02911 5.14606 5.33877 5.55736 5.75509 6.02436 6.24149 6.44644 6.78234 6.95072 8.17193 8.42950 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.051031 B = 0.011336 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.557968 B = 2469.463235 C = 2997.574022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.331 6.331 3 C 0.172 3.828 4 C -0.373 4.373 5 C 0.241 3.759 6 C -0.466 4.466 7 H 0.088 0.912 8 C 0.023 3.977 9 N -0.753 5.753 10 Si 0.991 3.009 11 H -0.254 1.254 12 H -0.265 1.265 13 H -0.264 1.264 14 N -0.533 5.533 15 C 0.136 3.864 16 C -0.316 4.316 17 C -0.062 4.062 18 H 0.128 0.872 19 H 0.049 0.951 20 H 0.049 0.951 21 H 0.115 0.885 22 H 0.281 0.719 23 H 0.147 0.853 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -4.632 -0.047 5.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.243 6.243 3 C 0.121 3.879 4 C -0.396 4.396 5 C 0.117 3.883 6 C -0.497 4.497 7 H 0.106 0.894 8 C -0.199 4.199 9 N -0.375 5.375 10 Si 0.811 3.189 11 H -0.177 1.177 12 H -0.189 1.189 13 H -0.189 1.189 14 N -0.248 5.248 15 C -0.029 4.029 16 C -0.322 4.322 17 C -0.119 4.119 18 H 0.146 0.854 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.133 0.867 22 H 0.091 0.909 23 H 0.164 0.836 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.503 -3.880 -0.041 4.617 hybrid contribution -0.953 0.014 0.009 0.953 sum -3.456 -3.866 -0.032 5.185 Atomic orbital electron populations 1.23169 0.77486 1.04884 1.01266 1.85883 1.22659 1.26987 1.88820 1.18986 0.92185 0.83627 0.93124 1.21896 0.99389 0.93044 1.25283 1.18842 0.88899 0.92560 0.88030 1.20020 0.94670 0.90452 1.44546 0.89389 1.27055 0.95993 1.04475 0.92386 1.70242 1.09795 1.28418 1.29031 0.85037 0.79208 0.75744 0.78945 1.17735 1.18925 1.18907 1.68695 1.06857 1.29002 1.20200 1.22820 0.99831 0.87523 0.92739 1.20090 0.91088 0.97682 1.23323 1.20116 0.97757 0.93253 1.00823 0.85371 0.93215 0.93216 0.86668 0.90862 0.83560 0.92898 0.92854 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.84 113.37 1.12 1.92 15 2 O -0.33 -13.28 9.65 -90.99 -0.88 -14.15 15 3 C 0.17 8.16 6.70 22.71 0.15 8.31 15 4 C -0.37 -19.20 8.83 22.95 0.20 -19.00 15 5 C 0.24 13.87 6.55 40.18 0.26 14.13 15 6 C -0.47 -25.93 9.14 23.49 0.21 -25.72 15 7 H 0.09 4.57 7.85 -2.91 -0.02 4.54 15 8 C 0.02 1.18 5.50 85.28 0.47 1.65 15 9 N -0.75 -41.30 11.46 21.83 0.25 -41.05 15 10 Si 0.99 38.26 29.56 68.60 2.03 40.29 15 11 H -0.25 -9.40 7.11 99.48 0.71 -8.69 15 12 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 13 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 14 N -0.53 -30.81 7.86 -189.29 -1.49 -32.29 15 15 C 0.14 6.84 10.85 84.83 0.92 7.76 15 16 C -0.32 -14.63 5.93 -19.48 -0.12 -14.75 15 17 C -0.06 -2.24 9.83 71.24 0.70 -1.53 15 18 H 0.13 2.76 8.14 -2.38 -0.02 2.74 15 19 H 0.05 1.50 7.71 -2.39 -0.02 1.48 15 20 H 0.05 1.50 7.70 -2.39 -0.02 1.48 15 21 H 0.12 5.43 6.45 -2.91 -0.02 5.41 15 22 H 0.28 13.75 8.29 -92.71 -0.77 12.98 15 23 H 0.15 6.40 8.06 -2.91 -0.02 6.38 15 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.05 1.84 7.60 -2.39 -0.02 1.83 15 26 H 0.07 2.09 8.09 -2.39 -0.02 2.07 15 Total: -1.00 -65.62 231.05 5.01 -60.61 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.17 Total: 13.82 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 3.92 Total: -27.23 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.24 Total: -73.34 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.88 Total: -14.15 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -65.62 5.01 -60.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238393045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.733 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds