Wall clock time and date at job start Mon Mar 30 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47222 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47299 * 119.99710 * 3 2 1 6 6 H 1.48493 * 109.47093 * 239.99834 * 3 2 1 7 7 C 1.39695 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00116 * 156.77170 * 7 2 1 9 9 C 1.41597 * 120.00138 * 336.77028 * 7 2 1 10 10 C 1.41887 * 126.55721 * 341.05659 * 9 7 2 11 11 N 1.30313 * 108.04760 * 179.87926 * 10 9 7 12 12 N 1.39876 * 109.23008 * 0.38635 * 11 10 9 13 13 C 1.46506 * 125.67777 * 179.72804 * 12 11 10 14 14 C 1.53934 * 113.73540 * 191.75606 * 13 12 11 15 15 N 1.47967 * 86.17860 * 221.92041 * 14 13 12 16 16 C 1.47958 * 90.76242 * 24.68840 * 15 14 13 17 17 C 1.34501 * 108.65081 * 359.75401 * 12 11 10 18 18 H 0.96994 * 120.00009 * 173.98265 * 1 2 3 19 19 H 1.08002 * 125.97654 * 0.03557 * 10 9 7 20 20 H 1.09003 * 112.93598 * 323.46620 * 13 12 11 21 21 H 1.08995 * 113.75789 * 336.23594 * 14 13 12 22 22 H 1.08994 * 113.75979 * 107.60781 * 14 13 12 23 23 H 1.00894 * 110.99704 * 271.79657 * 15 14 13 24 24 H 1.08997 * 113.75757 * 220.98744 * 16 15 14 25 25 H 1.09005 * 113.75663 * 89.62846 * 16 15 14 26 26 H 1.08003 * 126.41073 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 1.2793 2.7465 0.0006 5 1 3.0981 1.6965 1.2126 6 1 3.0980 1.6964 -1.2124 7 6 2.0087 -1.2098 0.0005 8 1 3.0230 -1.2479 -0.3683 9 6 1.3868 -2.3862 0.4847 10 6 0.2463 -2.4542 1.3260 11 7 -0.0187 -3.7110 1.5460 12 7 0.9219 -4.5036 0.8800 13 6 0.9643 -5.9680 0.8881 14 6 2.2650 -6.5534 0.3091 15 7 1.4009 -7.5485 -0.3636 16 6 0.2540 -6.6151 -0.3145 17 6 1.7813 -3.6976 0.2312 18 1 -0.4850 -0.8354 -0.0881 19 1 -0.3071 -1.6118 1.7140 20 1 0.6781 -6.3959 1.8489 21 1 2.7803 -5.8830 -0.3786 22 1 2.9261 -6.9833 1.0615 23 1 1.2414 -8.3488 0.2298 24 1 -0.6915 -7.0942 -0.0604 25 1 0.1812 -5.9627 -1.1847 26 1 2.6202 -4.0091 -0.3736 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258602511.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:43 Heat of formation + Delta-G solvation = 84.415078 kcal Electronic energy + Delta-G solvation = -11689.426890 eV Core-core repulsion = 9576.820620 eV Total energy + Delta-G solvation = -2112.606270 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.79186 -39.95501 -35.63930 -32.38880 -30.91064 -27.59755 -27.12001 -26.13442 -22.78912 -21.63440 -20.47527 -19.65506 -17.72365 -17.47975 -15.74898 -15.70490 -15.40907 -14.74029 -14.64836 -14.04067 -13.73813 -13.62837 -13.03246 -12.73952 -12.67003 -12.13449 -11.91555 -11.78613 -11.04872 -10.78698 -10.06909 -9.78084 -9.29009 -8.91713 -6.09211 1.17677 1.56444 1.59813 1.86361 1.95785 2.23321 2.50104 2.78313 3.24315 3.36679 3.68036 4.06775 4.21195 4.34966 4.49774 4.55446 4.62200 4.71837 4.92130 5.14298 5.33982 5.71569 6.04171 6.16076 6.25422 6.58748 6.86012 7.08445 7.30565 8.37410 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.079568 B = 0.009031 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.816075 B = 3099.792572 C = 3274.097324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C -0.004 4.004 3 Si 1.120 2.880 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.062 0.938 9 C -0.063 4.063 10 C -0.027 4.027 11 N -0.333 5.333 12 N -0.362 5.362 13 C 0.087 3.913 14 C 0.026 3.974 15 N -0.646 5.646 16 C 0.015 3.985 17 C -0.102 4.102 18 H 0.273 0.727 19 H 0.154 0.846 20 H 0.121 0.879 21 H 0.096 0.904 22 H 0.110 0.890 23 H 0.356 0.644 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -9.794 0.826 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.213 4.213 3 Si 0.938 3.062 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.081 0.919 9 C -0.073 4.073 10 C -0.211 4.211 11 N -0.157 5.157 12 N -0.150 5.150 13 C -0.017 4.017 14 C -0.105 4.105 15 N -0.275 5.275 16 C -0.116 4.116 17 C -0.244 4.244 18 H 0.085 0.915 19 H 0.172 0.828 20 H 0.139 0.861 21 H 0.114 0.886 22 H 0.128 0.872 23 H 0.173 0.827 24 H 0.117 0.883 25 H 0.097 0.903 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.945 -9.169 0.642 9.652 hybrid contribution 0.099 -0.929 0.527 1.073 sum 3.043 -10.098 1.169 10.612 Atomic orbital electron populations 1.70685 1.08765 1.32013 1.37868 1.28093 0.95841 1.06862 0.90513 0.82957 0.74464 0.70211 0.78541 1.20290 1.19299 1.18725 1.19776 1.01480 0.94108 1.43772 0.91927 1.18622 0.96199 0.93621 0.98813 1.23772 1.01286 0.93645 1.02440 1.76361 1.15093 1.03389 1.20875 1.47895 1.21876 1.05276 1.39988 1.25139 0.99914 0.75298 1.01315 1.24108 0.94643 0.94012 0.97703 1.65082 1.07114 1.05794 1.49467 1.24105 0.96159 0.94673 0.96624 1.22487 1.02704 0.89770 1.09430 0.91544 0.82846 0.86098 0.88600 0.87172 0.82739 0.88341 0.90290 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.05 12.66 21.79 0.28 -49.77 15 2 C 0.00 -0.20 5.28 85.16 0.45 0.25 15 3 Si 1.12 46.40 29.99 68.60 2.06 48.46 15 4 H -0.28 -11.38 7.11 99.48 0.71 -10.68 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.56 -31.69 9.31 23.45 0.22 -31.47 15 8 H 0.06 3.45 7.94 -2.91 -0.02 3.42 15 9 C -0.06 -3.48 5.55 -21.30 -0.12 -3.60 15 10 C -0.03 -1.48 10.01 85.82 0.86 -0.62 15 11 N -0.33 -16.69 12.47 -55.93 -0.70 -17.38 15 12 N -0.36 -15.66 3.78 -328.07 -1.24 -16.90 15 13 C 0.09 2.66 5.19 46.55 0.24 2.90 15 14 C 0.03 0.64 8.25 86.40 0.71 1.35 15 15 N -0.65 -14.48 8.56 -524.59 -4.49 -18.97 15 16 C 0.02 0.42 8.70 86.41 0.75 1.17 15 17 C -0.10 -4.84 10.75 84.53 0.91 -3.93 15 18 H 0.27 16.37 6.25 -92.71 -0.58 15.79 15 19 H 0.15 8.60 6.92 -2.91 -0.02 8.58 15 20 H 0.12 3.26 8.14 -2.39 -0.02 3.24 15 21 H 0.10 2.67 6.27 -2.39 -0.01 2.65 15 22 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.36 5.76 8.89 -89.70 -0.80 4.96 15 24 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.08 2.57 8.14 -2.38 -0.02 2.56 15 26 H 0.17 7.03 6.65 -2.91 -0.02 7.01 15 Total: -1.00 -66.30 227.29 0.52 -65.78 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.59 Total: 22.75 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 4.02 Total: -33.95 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -6.15 Total: -103.03 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.06 Total: 48.46 kcal Total: -66.30 0.52 -65.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258602511.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.196 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds