Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.30720 * 125.52557 * 90.01899 * 10 9 7 12 12 N 1.40444 * 106.79172 * 179.97438 * 11 10 9 13 13 H 0.97000 * 126.82785 * 179.97438 * 12 11 10 14 14 C 1.34435 * 106.35186 * 359.97438 * 12 11 10 15 15 C 1.50700 * 125.95843 * 180.02562 * 14 12 11 16 16 C 1.53006 * 117.50115 * 343.74493 * 15 14 12 17 17 C 1.53002 * 117.49810 * 275.09020 * 15 14 12 18 18 N 1.30828 * 108.07807 * 359.75808 * 14 12 11 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.09001 * 115.55320 * 129.42026 * 15 14 12 23 23 H 1.08996 * 117.49314 * 0.02562 * 16 15 14 24 24 H 1.08999 * 117.49856 * 145.01528 * 16 15 14 25 25 H 1.09008 * 117.49629 * 214.98045 * 17 15 14 26 26 H 1.08997 * 117.49769 * 359.96999 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 2.7184 -4.2195 1.0809 12 7 3.5843 -5.2320 0.6365 13 1 4.1016 -5.8387 1.1890 14 6 3.5538 -5.1934 -0.7070 15 6 4.3251 -6.0951 -1.6359 16 6 5.4961 -6.8830 -1.0450 17 6 5.7630 -5.6967 -1.9747 18 7 2.7332 -4.2402 -1.0672 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 3.7386 -6.5764 -2.4185 23 1 5.7081 -6.7494 0.0158 24 1 5.6800 -7.8825 -1.4389 25 1 6.1225 -5.9162 -2.9801 26 1 6.1508 -4.7821 -1.5261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259418298.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 96.093290 kcal Electronic energy + Delta-G solvation = -11377.522248 eV Core-core repulsion = 9265.422384 eV Total energy + Delta-G solvation = -2112.099864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.54265 -37.26235 -33.77935 -31.90881 -30.69614 -27.62396 -24.12675 -23.32998 -22.59854 -20.16328 -19.68440 -17.54838 -16.73293 -15.97158 -14.89325 -14.44323 -13.72189 -13.21675 -12.74810 -12.07106 -11.81622 -11.51288 -11.45305 -10.89163 -10.72190 -10.60841 -10.47901 -10.03404 -9.57425 -9.33849 -9.03906 -8.39009 -8.33739 -6.36243 -4.05187 2.11298 3.08608 3.43865 3.48780 3.50708 3.68636 3.71503 4.24683 4.58129 4.59076 4.73147 5.03370 5.33741 5.38571 5.52977 5.57325 5.71165 5.80460 5.94116 6.94156 7.04243 7.20088 7.31885 7.56615 8.09051 8.43917 8.84666 8.85260 9.63052 11.04368 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.057468 B = 0.008430 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.112345 B = 3320.806000 C = 3541.917829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.019 3.981 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.288 1.288 7 C -0.587 4.587 8 H 0.048 0.952 9 C 0.090 3.910 10 C 0.277 3.723 11 N -0.329 5.329 12 N -0.497 5.497 13 H 0.428 0.572 14 C 0.291 3.709 15 C -0.077 4.077 16 C -0.176 4.176 17 C -0.154 4.154 18 N -0.529 5.529 19 H 0.269 0.731 20 H 0.034 0.966 21 H 0.040 0.960 22 H 0.136 0.864 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 -12.574 -2.266 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.067 0.933 9 C 0.050 3.950 10 C -0.004 4.004 11 N -0.156 5.156 12 N -0.215 5.215 13 H 0.272 0.728 14 C 0.012 3.988 15 C -0.098 4.098 16 C -0.214 4.214 17 C -0.192 4.192 18 N -0.257 5.257 19 H 0.080 0.920 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.154 0.846 23 H 0.111 0.889 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.690 -10.567 -1.875 14.459 hybrid contribution 0.734 -2.276 0.314 2.412 sum 10.424 -12.842 -1.561 16.614 Atomic orbital electron populations 1.70785 1.06753 1.30614 1.46391 1.25862 0.96473 1.02531 0.93579 0.83473 0.74820 0.74972 0.76559 1.21352 1.20611 1.21457 1.21717 0.94235 0.90517 1.56154 0.93331 1.17902 0.91255 0.87626 0.98204 1.25081 0.96049 0.95409 0.83875 1.78108 1.10931 1.04014 1.22585 1.47992 1.37968 1.29723 1.05839 0.72773 1.23190 0.96450 0.95676 0.83471 1.20240 0.89773 0.99878 0.99888 1.23069 1.01288 0.97330 0.99695 1.23042 0.95917 0.99121 1.01143 1.70371 1.13929 1.09456 1.31994 0.92042 0.94754 0.94220 0.84639 0.88905 0.87367 0.87365 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.65 55.43 0.76 -27.39 15 2 C 0.02 0.58 5.46 -17.82 -0.10 0.48 15 3 Si 1.07 26.05 29.90 -169.99 -5.08 20.96 15 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.59 -17.64 9.09 -34.44 -0.31 -17.96 15 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.09 2.50 4.91 -29.04 -0.14 2.36 15 10 C 0.28 7.03 7.33 -156.85 -1.15 5.88 15 11 N -0.33 -7.64 12.80 32.42 0.41 -7.23 15 12 N -0.50 -8.79 7.30 32.62 0.24 -8.56 15 13 H 0.43 5.58 8.18 -182.34 -1.49 4.09 15 14 C 0.29 5.24 7.73 -155.69 -1.20 4.03 15 15 C -0.08 -0.95 6.33 -91.77 -0.58 -1.53 15 16 C -0.18 -1.51 10.13 -26.69 -0.27 -1.78 15 17 C -0.15 -1.58 10.24 -26.70 -0.27 -1.85 15 18 N -0.53 -12.26 11.19 -8.16 -0.09 -12.35 15 19 H 0.27 8.25 7.22 -40.82 -0.29 7.96 15 20 H 0.03 0.97 8.00 -51.93 -0.42 0.56 15 21 H 0.04 1.13 8.01 -51.93 -0.42 0.71 15 22 H 0.14 1.48 8.14 -51.93 -0.42 1.06 15 23 H 0.09 0.75 7.36 -51.93 -0.38 0.36 15 24 H 0.11 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.11 0.88 8.14 -51.92 -0.42 0.45 15 26 H 0.10 1.17 8.14 -51.93 -0.42 0.74 15 LS Contribution 236.48 15.07 3.56 3.56 Total: -1.00 -34.84 236.48 -8.13 -42.97 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.89 Total: -1.61 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -4.03 Total: -10.36 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 1.32 Total: -55.53 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.84 -8.13 -42.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259418298.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.059 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds