Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.30720 * 125.52557 * 90.01899 * 10 9 7 12 12 N 1.40444 * 106.79172 * 179.97438 * 11 10 9 13 13 H 0.97000 * 126.82785 * 179.97438 * 12 11 10 14 14 C 1.34435 * 106.35186 * 359.97438 * 12 11 10 15 15 C 1.50700 * 125.95843 * 180.02562 * 14 12 11 16 16 C 1.53006 * 117.50115 * 343.74493 * 15 14 12 17 17 C 1.53002 * 117.49810 * 275.09020 * 15 14 12 18 18 N 1.30828 * 108.07807 * 359.75808 * 14 12 11 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.09001 * 115.55320 * 129.42026 * 15 14 12 23 23 H 1.08996 * 117.49314 * 0.02562 * 16 15 14 24 24 H 1.08999 * 117.49856 * 145.01528 * 16 15 14 25 25 H 1.09008 * 117.49629 * 214.98045 * 17 15 14 26 26 H 1.08997 * 117.49769 * 359.96999 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 2.7184 -4.2195 1.0809 12 7 3.5843 -5.2320 0.6365 13 1 4.1016 -5.8387 1.1890 14 6 3.5538 -5.1934 -0.7070 15 6 4.3251 -6.0951 -1.6359 16 6 5.4961 -6.8830 -1.0450 17 6 5.7630 -5.6967 -1.9747 18 7 2.7332 -4.2402 -1.0672 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 3.7386 -6.5764 -2.4185 23 1 5.7081 -6.7494 0.0158 24 1 5.6800 -7.8825 -1.4389 25 1 6.1225 -5.9162 -2.9801 26 1 6.1508 -4.7821 -1.5261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259418298.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 72.182552 kcal Electronic energy + Delta-G solvation = -11378.559095 eV Core-core repulsion = 9265.422384 eV Total energy + Delta-G solvation = -2113.136712 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.17713 -38.19970 -35.94919 -33.69174 -32.43381 -29.67813 -25.61155 -25.31396 -23.36028 -21.57339 -21.44511 -19.11016 -18.81785 -17.12348 -16.45720 -15.84391 -15.59850 -15.09029 -14.23420 -14.00560 -13.54430 -12.89295 -12.78068 -12.50993 -12.47840 -11.90784 -11.86880 -11.52450 -11.38254 -11.07537 -10.82151 -10.61173 -10.28287 -8.75639 -6.46709 0.55574 1.51714 1.61173 1.68030 1.81647 1.85387 2.55417 2.63980 3.06388 3.10028 3.69492 3.75290 3.89300 4.07839 4.25913 4.69932 4.81634 4.90898 4.99309 5.05134 5.16137 5.28822 5.35672 5.78982 6.02850 6.21135 6.45594 7.15356 7.30925 8.65294 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.057468 B = 0.008430 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.112345 B = 3320.806000 C = 3541.917829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.027 4.027 3 Si 1.123 2.877 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.604 4.604 8 H 0.037 0.963 9 C 0.096 3.904 10 C 0.252 3.748 11 N -0.352 5.352 12 N -0.477 5.477 13 H 0.451 0.549 14 C 0.311 3.689 15 C -0.107 4.107 16 C -0.141 4.141 17 C -0.153 4.153 18 N -0.573 5.573 19 H 0.258 0.742 20 H 0.019 0.981 21 H 0.022 0.978 22 H 0.151 0.849 23 H 0.100 0.900 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 -13.757 -2.629 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.943 3.057 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.643 4.643 8 H 0.055 0.945 9 C 0.056 3.944 10 C -0.029 4.029 11 N -0.181 5.181 12 N -0.197 5.197 13 H 0.300 0.700 14 C 0.033 3.967 15 C -0.128 4.128 16 C -0.178 4.178 17 C -0.192 4.192 18 N -0.302 5.302 19 H 0.068 0.932 20 H 0.037 0.963 21 H 0.040 0.960 22 H 0.169 0.831 23 H 0.118 0.882 24 H 0.161 0.839 25 H 0.152 0.848 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.048 -11.810 -2.219 17.016 hybrid contribution 0.068 -2.060 0.423 2.104 sum 12.116 -13.871 -1.797 18.505 Atomic orbital electron populations 1.70903 1.07599 1.30028 1.47725 1.27485 0.96558 1.06367 0.92116 0.82875 0.74139 0.70796 0.77897 1.19518 1.19873 1.19661 1.21944 0.93806 0.91954 1.56604 0.94479 1.17576 0.91607 0.88697 0.96508 1.24514 0.97064 0.95962 0.85408 1.77924 1.12080 1.05462 1.22651 1.47784 1.36900 1.28686 1.06366 0.70044 1.24125 0.94399 0.94182 0.83968 1.20562 0.90656 1.01074 1.00527 1.23291 0.96345 0.98184 0.99979 1.23167 0.93419 0.99469 1.03128 1.70277 1.16237 1.11617 1.32097 0.93247 0.96331 0.95971 0.83118 0.88185 0.83891 0.84810 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.55 13.65 21.45 0.29 -58.26 15 2 C -0.03 -1.62 5.46 84.66 0.46 -1.16 15 3 Si 1.12 52.15 29.90 68.60 2.05 54.20 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 5 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 7 C -0.60 -37.38 9.09 25.60 0.23 -37.15 15 8 H 0.04 2.32 7.74 -2.91 -0.02 2.30 15 9 C 0.10 5.60 4.91 29.10 0.14 5.75 15 10 C 0.25 13.20 7.33 138.63 1.02 14.21 15 11 N -0.35 -16.54 12.80 -51.33 -0.66 -17.20 15 12 N -0.48 -16.27 7.30 -50.71 -0.37 -16.64 15 13 H 0.45 10.65 8.18 -213.10 -1.74 8.91 15 14 C 0.31 10.85 7.73 138.23 1.07 11.92 15 15 C -0.11 -2.33 6.33 -11.54 -0.07 -2.40 15 16 C -0.14 -1.75 10.13 30.62 0.31 -1.44 15 17 C -0.15 -2.63 10.24 30.62 0.31 -2.32 15 18 N -0.57 -26.91 11.19 -179.72 -2.01 -28.93 15 19 H 0.26 16.47 7.22 -92.71 -0.67 15.80 15 20 H 0.02 1.12 8.00 -2.39 -0.02 1.10 15 21 H 0.02 1.34 8.01 -2.39 -0.02 1.32 15 22 H 0.15 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.10 1.13 7.36 -2.39 -0.02 1.11 15 24 H 0.14 0.90 8.14 -2.39 -0.02 0.88 15 25 H 0.13 1.62 8.14 -2.38 -0.02 1.60 15 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 Total: -1.00 -77.96 236.48 2.33 -75.63 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -0.45 Total: 3.79 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 3.47 Total: -12.59 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -2.74 Total: -121.03 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Total: -77.96 2.33 -75.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259418298.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.811 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds