Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38824 * 119.98789 * 2 1 4 4 C 1.38557 * 118.04787 * 180.02562 * 3 2 1 5 5 C 1.39576 * 117.90522 * 0.02562 * 4 3 2 6 6 N 1.38876 * 120.16373 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99928 * 184.97445 * 6 5 4 8 8 C 1.36905 * 120.00317 * 4.97680 * 6 5 4 9 9 H 1.08002 * 119.99866 * 24.04862 * 8 6 5 10 10 C 1.38823 * 119.99930 * 204.04708 * 8 6 5 11 11 N 1.31563 * 120.00188 * 10.48895 * 10 8 6 12 12 Si 1.86800 * 119.99769 * 190.48000 * 10 8 6 13 13 H 1.48503 * 109.46706 * 90.00343 * 12 10 8 14 14 H 1.48498 * 109.47216 * 209.99942 * 12 10 8 15 15 H 1.48502 * 109.47318 * 330.00881 * 12 10 8 16 16 N 1.32579 * 119.67031 * 359.97438 * 5 4 3 17 17 N 1.28342 * 122.05681 * 0.02562 * 16 5 4 18 18 H 1.08995 * 109.47822 * 269.98112 * 1 2 3 19 19 H 1.09009 * 109.46812 * 29.98126 * 1 2 3 20 20 H 1.09006 * 109.47329 * 149.97371 * 1 2 3 21 21 H 1.08001 * 120.97032 * 0.04134 * 3 2 1 22 22 H 1.08001 * 121.04688 * 180.02562 * 4 3 2 23 23 H 1.09006 * 109.46863 * 93.72786 * 7 6 5 24 24 H 1.08998 * 109.47485 * 213.72275 * 7 6 5 25 25 H 1.09001 * 109.47133 * 333.73034 * 7 6 5 26 26 H 0.96994 * 120.00095 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2008 1.2024 0.0000 4 6 3.5856 1.1555 -0.0005 5 6 4.1967 -0.0994 -0.0016 6 7 5.5817 -0.2011 -0.0017 7 6 6.2197 -1.5152 -0.1128 8 6 6.3509 0.9267 0.1022 9 1 5.9454 1.8167 0.5603 10 6 7.6523 0.9262 -0.3813 11 7 8.0797 -0.0759 -1.1188 12 14 8.7963 2.3487 0.0151 13 1 9.5282 2.0591 1.2744 14 1 9.7689 2.5253 -1.0932 15 1 8.0015 3.5923 0.1793 16 7 3.4483 -1.1938 -0.0016 17 7 2.1660 -1.1421 -0.0010 18 1 -0.3634 -0.0003 1.0276 19 1 -0.3633 0.8902 -0.5136 20 1 -0.3634 -0.8898 -0.5143 21 1 1.6765 2.1466 0.0007 22 1 4.1736 2.0614 -0.0002 23 1 6.4446 -1.7225 -1.1591 24 1 7.1437 -1.5206 0.4654 25 1 5.5455 -2.2802 0.2724 26 1 8.9888 -0.0761 -1.4569 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259428746.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = 64.688733 kcal Electronic energy + Delta-G solvation = -11707.039994 eV Core-core repulsion = 9593.578325 eV Total energy + Delta-G solvation = -2113.461668 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.69052 -36.44030 -32.83293 -32.16499 -30.66927 -27.06886 -26.69528 -24.13761 -22.35286 -21.19628 -17.62980 -16.51492 -16.04695 -14.77417 -14.33045 -14.24242 -13.59996 -13.09693 -12.81735 -12.30769 -12.01574 -11.64865 -11.58127 -11.28956 -10.87802 -10.59169 -10.54097 -9.97797 -9.68455 -9.10472 -8.93841 -8.36253 -7.11589 -6.54411 -4.01665 2.02672 2.29233 3.05258 3.07385 3.10609 3.85740 4.56672 4.61285 5.00649 5.36618 5.58908 5.69029 6.01281 6.08374 6.10119 6.18141 6.45900 6.64915 6.80124 6.91296 7.11869 7.19214 7.26206 7.33312 7.76715 8.40913 9.03485 9.28635 10.15713 10.42540 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.066070 B = 0.010226 C = 0.009053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.690042 B = 2737.341945 C = 3092.165663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.070 4.070 3 C -0.083 4.083 4 C -0.188 4.188 5 C 0.295 3.705 6 N -0.406 5.406 7 C 0.122 3.878 8 C -0.317 4.317 9 H 0.099 0.901 10 C 0.035 3.965 11 N -0.862 5.862 12 Si 0.934 3.066 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.267 1.267 16 N -0.346 5.346 17 N -0.201 5.201 18 H 0.057 0.943 19 H 0.058 0.942 20 H 0.063 0.937 21 H 0.124 0.876 22 H 0.135 0.865 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 3.420 1.659 6.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.222 4.222 3 C -0.111 4.111 4 C -0.223 4.223 5 C 0.050 3.950 6 N -0.095 5.095 7 C -0.021 4.021 8 C -0.446 4.446 9 H 0.116 0.884 10 C -0.172 4.172 11 N -0.496 5.496 12 Si 0.760 3.240 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.192 1.192 16 N -0.205 5.205 17 N -0.046 5.046 18 H 0.076 0.924 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.142 0.858 22 H 0.153 0.847 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.258 1.713 1.538 4.841 hybrid contribution 0.826 2.359 0.081 2.500 sum -3.432 4.071 1.619 5.565 Atomic orbital electron populations 1.20225 0.89728 1.01778 1.01263 1.21864 0.97284 0.90866 1.12181 1.21686 0.93905 0.98351 0.97166 1.21588 0.94451 0.98151 1.08064 1.20070 0.87275 0.91142 0.96550 1.42437 0.99194 1.07294 1.60532 1.21476 0.95926 0.82592 1.02083 1.19679 0.94687 0.92659 1.37564 0.88360 1.25476 0.98331 0.98668 0.94738 1.70094 1.18295 1.31048 1.30166 0.85800 0.79562 0.80345 0.78304 1.19964 1.20527 1.19164 1.72782 0.98527 1.24720 1.24488 1.72329 1.01499 1.25160 1.05626 0.92382 0.92305 0.91799 0.85804 0.84735 0.92198 0.92034 0.93455 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.19 36.00 0.37 -0.68 15 2 C -0.07 -1.39 6.87 -82.37 -0.57 -1.95 15 3 C -0.08 -1.60 9.86 -39.25 -0.39 -1.98 15 4 C -0.19 -4.14 9.35 -38.97 -0.36 -4.51 15 5 C 0.29 7.37 7.41 -154.83 -1.15 6.22 15 6 N -0.41 -10.49 3.12 -122.28 -0.38 -10.87 15 7 C 0.12 3.01 8.79 59.85 0.53 3.54 15 8 C -0.32 -8.07 8.94 -15.07 -0.13 -8.21 15 9 H 0.10 2.38 6.38 -52.49 -0.34 2.04 15 10 C 0.03 0.86 5.14 -17.45 -0.09 0.77 15 11 N -0.86 -22.24 10.64 55.49 0.59 -21.65 15 12 Si 0.93 19.03 29.57 -169.99 -5.03 14.00 15 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 16 N -0.35 -8.70 10.21 31.23 0.32 -8.39 15 17 N -0.20 -4.66 11.42 33.62 0.38 -4.28 15 18 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.06 0.72 8.09 -51.92 -0.42 0.30 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 21 H 0.12 1.87 8.06 -52.49 -0.42 1.45 15 22 H 0.13 2.81 6.40 -52.49 -0.34 2.48 15 23 H 0.06 1.54 7.41 -51.93 -0.38 1.15 15 24 H 0.06 1.51 7.25 -51.93 -0.38 1.13 15 25 H 0.05 1.11 7.21 -51.93 -0.37 0.73 15 26 H 0.27 6.62 8.31 -40.82 -0.34 6.29 15 LS Contribution 228.21 15.07 3.44 3.44 Total: -1.00 -28.35 228.21 -5.10 -33.45 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -2.63 Total: 1.08 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.80 Total: -6.79 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.91 Total: -45.18 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.35 -5.10 -33.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259428746.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.139 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds