Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38824 * 119.98789 * 2 1 4 4 C 1.38557 * 118.04787 * 180.02562 * 3 2 1 5 5 C 1.39576 * 117.90522 * 0.02562 * 4 3 2 6 6 N 1.38876 * 120.16373 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99928 * 184.97445 * 6 5 4 8 8 C 1.36905 * 120.00317 * 4.97680 * 6 5 4 9 9 H 1.08002 * 119.99866 * 24.04862 * 8 6 5 10 10 C 1.38823 * 119.99930 * 204.04708 * 8 6 5 11 11 N 1.31563 * 120.00188 * 10.48895 * 10 8 6 12 12 Si 1.86800 * 119.99769 * 190.48000 * 10 8 6 13 13 H 1.48503 * 109.46706 * 90.00343 * 12 10 8 14 14 H 1.48498 * 109.47216 * 209.99942 * 12 10 8 15 15 H 1.48502 * 109.47318 * 330.00881 * 12 10 8 16 16 N 1.32579 * 119.67031 * 359.97438 * 5 4 3 17 17 N 1.28342 * 122.05681 * 0.02562 * 16 5 4 18 18 H 1.08995 * 109.47822 * 269.98112 * 1 2 3 19 19 H 1.09009 * 109.46812 * 29.98126 * 1 2 3 20 20 H 1.09006 * 109.47329 * 149.97371 * 1 2 3 21 21 H 1.08001 * 120.97032 * 0.04134 * 3 2 1 22 22 H 1.08001 * 121.04688 * 180.02562 * 4 3 2 23 23 H 1.09006 * 109.46863 * 93.72786 * 7 6 5 24 24 H 1.08998 * 109.47485 * 213.72275 * 7 6 5 25 25 H 1.09001 * 109.47133 * 333.73034 * 7 6 5 26 26 H 0.96994 * 120.00095 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2008 1.2024 0.0000 4 6 3.5856 1.1555 -0.0005 5 6 4.1967 -0.0994 -0.0016 6 7 5.5817 -0.2011 -0.0017 7 6 6.2197 -1.5152 -0.1128 8 6 6.3509 0.9267 0.1022 9 1 5.9454 1.8167 0.5603 10 6 7.6523 0.9262 -0.3813 11 7 8.0797 -0.0759 -1.1188 12 14 8.7963 2.3487 0.0151 13 1 9.5282 2.0591 1.2744 14 1 9.7689 2.5253 -1.0932 15 1 8.0015 3.5923 0.1793 16 7 3.4483 -1.1938 -0.0016 17 7 2.1660 -1.1421 -0.0010 18 1 -0.3634 -0.0003 1.0276 19 1 -0.3633 0.8902 -0.5136 20 1 -0.3634 -0.8898 -0.5143 21 1 1.6765 2.1466 0.0007 22 1 4.1736 2.0614 -0.0002 23 1 6.4446 -1.7225 -1.1591 24 1 7.1437 -1.5206 0.4654 25 1 5.5455 -2.2802 0.2724 26 1 8.9888 -0.0761 -1.4569 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259428746.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = 47.436827 kcal Electronic energy + Delta-G solvation = -11707.788092 eV Core-core repulsion = 9593.578325 eV Total energy + Delta-G solvation = -2114.209767 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.44421 -38.24594 -34.53287 -33.90679 -32.36536 -28.77743 -28.42052 -25.94390 -24.03194 -22.93550 -19.44260 -18.32835 -17.81070 -16.47202 -16.01764 -15.90429 -15.31008 -14.77785 -14.50122 -13.79419 -13.49327 -13.29145 -13.03474 -12.93688 -12.66651 -12.42825 -12.12148 -11.68270 -11.50623 -10.83176 -10.66115 -10.09444 -8.96261 -8.36931 -5.93220 0.32323 0.60636 1.42319 1.47243 1.55488 2.17604 2.79786 2.82973 3.20054 3.80923 4.11441 4.15503 4.29342 4.57542 4.71436 4.87599 4.93237 4.97824 5.09529 5.24903 5.25309 5.31237 5.50543 5.73169 5.95727 6.55803 7.19516 7.45974 8.39053 8.62559 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.066070 B = 0.010226 C = 0.009053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.690042 B = 2737.341945 C = 3092.165663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.053 4.053 3 C -0.069 4.069 4 C -0.200 4.200 5 C 0.278 3.722 6 N -0.435 5.435 7 C 0.143 3.857 8 C -0.339 4.339 9 H 0.105 0.895 10 C -0.010 4.010 11 N -0.900 5.900 12 Si 1.004 2.996 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.255 1.255 16 N -0.380 5.380 17 N -0.237 5.237 18 H 0.079 0.921 19 H 0.094 0.906 20 H 0.066 0.934 21 H 0.178 0.822 22 H 0.144 0.856 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 5.524 2.084 8.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.207 4.207 3 C -0.096 4.096 4 C -0.235 4.235 5 C 0.034 3.966 6 N -0.128 5.128 7 C -0.001 4.001 8 C -0.467 4.467 9 H 0.123 0.877 10 C -0.213 4.213 11 N -0.535 5.535 12 Si 0.827 3.173 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.179 1.179 16 N -0.238 5.238 17 N -0.079 5.079 18 H 0.098 0.902 19 H 0.112 0.888 20 H 0.085 0.915 21 H 0.195 0.805 22 H 0.161 0.839 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.270 3.788 1.971 7.585 hybrid contribution 1.090 1.710 -0.046 2.028 sum -5.180 5.498 1.925 7.795 Atomic orbital electron populations 1.20423 0.85582 1.03733 1.03228 1.22873 0.99999 0.90214 1.07648 1.22275 0.92710 1.00380 0.94263 1.21878 0.96117 0.97350 1.08128 1.20490 0.87316 0.92474 0.96325 1.42532 0.99688 1.07277 1.63330 1.21156 0.95445 0.83084 1.00400 1.19991 0.95426 0.92953 1.38334 0.87717 1.26392 0.99476 1.01150 0.94266 1.70211 1.18659 1.33027 1.31652 0.84754 0.77306 0.77481 0.77807 1.19684 1.20587 1.17903 1.72722 0.99657 1.25572 1.25838 1.72302 1.00883 1.27197 1.07539 0.90241 0.88770 0.91541 0.80504 0.83862 0.94359 0.92976 0.93342 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.19 71.23 0.73 -1.01 15 2 C -0.05 -1.94 6.87 42.69 0.29 -1.65 15 3 C -0.07 -2.35 9.86 22.49 0.22 -2.13 15 4 C -0.20 -8.50 9.35 22.67 0.21 -8.29 15 5 C 0.28 14.02 7.41 133.16 0.99 15.00 15 6 N -0.44 -23.14 3.12 -540.78 -1.69 -24.83 15 7 C 0.14 7.39 8.79 127.77 1.12 8.51 15 8 C -0.34 -17.51 8.94 84.04 0.75 -16.76 15 9 H 0.11 5.06 6.38 -2.91 -0.02 5.04 15 10 C -0.01 -0.50 5.14 84.87 0.44 -0.07 15 11 N -0.90 -47.91 10.64 21.65 0.23 -47.68 15 12 Si 1.00 39.03 29.57 68.60 2.03 41.06 15 13 H -0.27 -10.33 7.11 99.48 0.71 -9.63 15 14 H -0.28 -10.80 7.11 99.48 0.71 -10.09 15 15 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 16 N -0.38 -19.35 10.21 -55.10 -0.56 -19.91 15 17 N -0.24 -10.74 11.42 -47.54 -0.54 -11.28 15 18 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 19 H 0.09 1.71 8.09 -2.38 -0.02 1.69 15 20 H 0.07 1.64 8.14 -2.38 -0.02 1.62 15 21 H 0.18 4.17 8.06 -2.91 -0.02 4.15 15 22 H 0.14 5.75 6.40 -2.91 -0.02 5.73 15 23 H 0.04 2.08 7.41 -2.38 -0.02 2.06 15 24 H 0.05 2.70 7.25 -2.39 -0.02 2.68 15 25 H 0.05 2.39 7.21 -2.39 -0.02 2.38 15 26 H 0.27 13.69 8.31 -92.71 -0.77 12.92 15 Total: -1.00 -62.81 228.21 5.40 -57.42 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.18 Total: 11.62 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.75 Total: -6.40 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -2.56 Total: -103.70 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -62.81 5.40 -57.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259428746.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.852 kcal (2) G-P(sol) polarization free energy of solvation -62.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds