Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99975 * 2 1 4 4 H 1.48501 * 109.46849 * 274.98552 * 3 2 1 5 5 H 1.48497 * 109.47096 * 34.98378 * 3 2 1 6 6 H 1.48501 * 109.46815 * 154.98718 * 3 2 1 7 7 C 1.37882 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99872 * 189.48231 * 7 2 1 9 9 C 1.50695 * 119.99875 * 9.47836 * 7 2 1 10 10 H 1.08997 * 109.48615 * 305.39595 * 9 7 2 11 11 C 1.53132 * 109.47323 * 185.38198 * 9 7 2 12 12 C 1.53361 * 109.48829 * 170.09884 * 11 9 7 13 13 C 1.50806 * 108.42005 * 49.84116 * 12 11 9 14 14 N 1.33879 * 128.12327 * 163.38619 * 13 12 11 15 15 C 1.30509 * 108.55981 * 180.02562 * 14 13 12 16 16 O 1.34223 * 108.83076 * 359.97438 * 15 14 13 17 17 C 1.34048 * 107.58187 * 359.97438 * 16 15 14 18 18 C 1.50707 * 128.33172 * 180.12853 * 17 16 15 19 19 H 0.97001 * 119.99531 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46827 * 290.10971 * 11 9 7 21 21 H 1.09000 * 109.46526 * 50.09709 * 11 9 7 22 22 H 1.08994 * 109.67723 * 169.57264 * 12 11 9 23 23 H 1.09004 * 109.67718 * 290.11088 * 12 11 9 24 24 H 1.08008 * 125.58198 * 180.24805 * 15 14 13 25 25 H 1.09000 * 109.67612 * 283.16154 * 18 17 16 26 26 H 1.08994 * 109.67567 * 43.69966 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5033 2.6199 0.8027 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0735 -1.2005 0.1546 9 6 1.2664 -2.4903 -0.2138 10 1 0.4570 -2.5720 0.5116 11 6 2.2333 -3.6641 -0.0342 12 6 1.4431 -4.9782 -0.0059 13 6 0.5115 -4.9996 -1.1916 14 7 -0.1257 -6.0502 -1.7232 15 6 -0.8324 -5.6367 -2.7394 16 8 -0.6607 -4.3126 -2.8765 17 6 0.1776 -3.9109 -1.9106 18 6 0.6844 -2.5192 -1.6320 19 1 -0.4849 0.8401 -0.0004 20 1 2.9400 -3.6829 -0.8638 21 1 2.7768 -3.5468 0.9034 22 1 2.1311 -5.8215 -0.0645 23 1 0.8650 -5.0390 0.9162 24 1 -1.4570 -6.2576 -3.3648 25 1 1.4608 -2.2604 -2.3520 26 1 -0.1377 -1.8075 -1.7064 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259466983.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = 2.829327 kcal Electronic energy + Delta-G solvation = -11936.829644 eV Core-core repulsion = 9788.392800 eV Total energy + Delta-G solvation = -2148.436844 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.78754 -36.60097 -34.20216 -32.36367 -29.47046 -28.82081 -24.99893 -22.91276 -21.51079 -21.21752 -18.60805 -16.51946 -16.48003 -15.94187 -14.66434 -14.24747 -14.02227 -12.98799 -12.53931 -12.47749 -12.07101 -11.42483 -11.34518 -10.97052 -10.64857 -10.57860 -10.35251 -10.14066 -9.62716 -9.18643 -9.09636 -8.47556 -7.82080 -6.13866 -4.17126 2.13269 3.24652 3.26936 3.33908 3.36312 3.41789 4.36240 4.64319 5.19497 5.56611 5.57990 5.89532 6.07811 6.16427 6.34543 6.54502 6.56858 6.60851 6.80660 6.91590 6.96133 7.16783 7.48474 7.74342 7.87722 8.27409 8.32404 8.87923 9.47992 10.95196 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.063495 B = 0.010816 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.873109 B = 2588.076512 C = 2871.382128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.053 3.947 10 H 0.041 0.959 11 C -0.112 4.112 12 C -0.032 4.032 13 C -0.039 4.039 14 N -0.482 5.482 15 C 0.122 3.878 16 O -0.205 6.205 17 C -0.013 4.013 18 C -0.027 4.027 19 H 0.263 0.737 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.240 0.760 25 H 0.072 0.928 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -6.102 -3.404 6.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.034 3.966 10 H 0.059 0.941 11 C -0.150 4.150 12 C -0.070 4.070 13 C -0.159 4.159 14 N -0.211 5.211 15 C -0.103 4.103 16 O -0.091 6.091 17 C -0.066 4.066 18 C -0.065 4.065 19 H 0.073 0.927 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.255 0.745 25 H 0.090 0.910 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.129 -6.579 -3.231 7.331 hybrid contribution 0.103 1.409 -0.472 1.490 sum 0.232 -5.169 -3.703 6.363 Atomic orbital electron populations 1.69969 1.06040 1.26936 1.49432 1.25036 0.94812 0.99375 0.94607 0.86587 0.80067 0.83385 0.78081 1.20606 1.21236 1.19715 1.21107 0.94324 0.90357 1.49830 0.91992 1.18740 0.94544 0.92645 0.90671 0.94070 1.21764 0.98422 0.93483 1.01313 1.20041 0.95107 0.99191 0.92662 1.21501 1.04193 0.88030 1.02169 1.70021 1.09789 1.32523 1.08750 1.27811 1.03174 0.80191 0.99088 1.84319 1.52112 1.25910 1.46784 1.24527 0.93011 1.00466 0.88617 1.20765 1.00253 0.84605 1.00864 0.92736 0.92993 0.91635 0.91613 0.91021 0.74456 0.91008 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 12.27 55.43 0.68 -23.93 15 2 C 0.06 1.71 5.25 -17.81 -0.09 1.62 15 3 Si 0.89 20.44 29.55 -169.99 -5.02 15.41 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 7 C -0.52 -13.52 8.45 -34.44 -0.29 -13.81 15 8 H 0.06 1.58 7.77 -52.49 -0.41 1.18 15 9 C 0.05 1.26 1.94 -91.54 -0.18 1.09 15 10 H 0.04 1.10 8.06 -51.93 -0.42 0.68 15 11 C -0.11 -2.27 5.15 -26.48 -0.14 -2.41 15 12 C -0.03 -0.61 6.30 -27.64 -0.17 -0.78 15 13 C -0.04 -0.81 6.98 -82.91 -0.58 -1.39 15 14 N -0.48 -9.38 11.29 -11.08 -0.13 -9.51 15 15 C 0.12 2.03 13.23 52.20 0.69 2.72 15 16 O -0.21 -4.03 10.77 6.61 0.07 -3.96 15 17 C -0.01 -0.27 7.24 -35.57 -0.26 -0.53 15 18 C -0.03 -0.62 5.31 -27.71 -0.15 -0.77 15 19 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 20 H 0.05 1.03 8.12 -51.93 -0.42 0.60 15 21 H 0.06 1.27 8.11 -51.93 -0.42 0.84 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.24 2.51 8.06 -52.48 -0.42 2.08 15 25 H 0.07 1.61 8.11 -51.93 -0.42 1.19 15 26 H 0.09 2.33 7.20 -51.93 -0.37 1.96 15 LS Contribution 225.07 15.07 3.39 3.39 Total: -1.00 -28.97 225.07 -5.04 -34.00 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -2.87 Total: -1.16 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.17 Total: -14.26 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.55 Total: -33.44 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.96 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.97 -5.04 -34.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466983.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.834 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds