Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99975 * 2 1 4 4 H 1.48501 * 109.46849 * 274.98552 * 3 2 1 5 5 H 1.48497 * 109.47096 * 34.98378 * 3 2 1 6 6 H 1.48501 * 109.46815 * 154.98718 * 3 2 1 7 7 C 1.37882 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99872 * 189.48231 * 7 2 1 9 9 C 1.50695 * 119.99875 * 9.47836 * 7 2 1 10 10 H 1.08997 * 109.48615 * 305.39595 * 9 7 2 11 11 C 1.53132 * 109.47323 * 185.38198 * 9 7 2 12 12 C 1.53361 * 109.48829 * 170.09884 * 11 9 7 13 13 C 1.50806 * 108.42005 * 49.84116 * 12 11 9 14 14 N 1.33879 * 128.12327 * 163.38619 * 13 12 11 15 15 C 1.30509 * 108.55981 * 180.02562 * 14 13 12 16 16 O 1.34223 * 108.83076 * 359.97438 * 15 14 13 17 17 C 1.34048 * 107.58187 * 359.97438 * 16 15 14 18 18 C 1.50707 * 128.33172 * 180.12853 * 17 16 15 19 19 H 0.97001 * 119.99531 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46827 * 290.10971 * 11 9 7 21 21 H 1.09000 * 109.46526 * 50.09709 * 11 9 7 22 22 H 1.08994 * 109.67723 * 169.57264 * 12 11 9 23 23 H 1.09004 * 109.67718 * 290.11088 * 12 11 9 24 24 H 1.08008 * 125.58198 * 180.24805 * 15 14 13 25 25 H 1.09000 * 109.67612 * 283.16154 * 18 17 16 26 26 H 1.08994 * 109.67567 * 43.69966 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5033 2.6199 0.8027 6 1 3.5955 1.4120 0.5920 7 6 2.0046 -1.1941 0.0005 8 1 3.0735 -1.2005 0.1546 9 6 1.2664 -2.4903 -0.2138 10 1 0.4570 -2.5720 0.5116 11 6 2.2333 -3.6641 -0.0342 12 6 1.4431 -4.9782 -0.0059 13 6 0.5115 -4.9996 -1.1916 14 7 -0.1257 -6.0502 -1.7232 15 6 -0.8324 -5.6367 -2.7394 16 8 -0.6607 -4.3126 -2.8765 17 6 0.1776 -3.9109 -1.9106 18 6 0.6844 -2.5192 -1.6320 19 1 -0.4849 0.8401 -0.0004 20 1 2.9400 -3.6829 -0.8638 21 1 2.7768 -3.5468 0.9034 22 1 2.1311 -5.8215 -0.0645 23 1 0.8650 -5.0390 0.9162 24 1 -1.4570 -6.2576 -3.3648 25 1 1.4608 -2.2604 -2.3520 26 1 -0.1377 -1.8075 -1.7064 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259466983.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = -16.854888 kcal Electronic energy + Delta-G solvation = -11937.683216 eV Core-core repulsion = 9788.392800 eV Total energy + Delta-G solvation = -2149.290416 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.29932 -38.31635 -35.79595 -34.26383 -31.13416 -30.54257 -26.87063 -24.54865 -23.02944 -22.92451 -20.29013 -18.46114 -17.95907 -17.53755 -16.52281 -15.77150 -15.68945 -14.68612 -14.30663 -14.21271 -13.74015 -13.17641 -13.05871 -12.75837 -12.45627 -12.32509 -11.97857 -11.74624 -11.33319 -11.11001 -10.87314 -10.50454 -9.40612 -8.16227 -6.26124 0.62408 1.43926 1.46461 1.56272 1.76858 1.94713 2.44333 3.16406 3.33202 4.02272 4.05457 4.28704 4.47501 4.56935 4.73231 4.77476 4.95728 5.03502 5.17643 5.20586 5.37021 5.53761 5.60370 5.81682 5.90071 6.29467 6.82269 6.85975 7.42652 8.92755 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.063495 B = 0.010816 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.873109 B = 2588.076512 C = 2871.382128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.051 3.949 10 H 0.005 0.995 11 C -0.103 4.103 12 C -0.030 4.030 13 C -0.039 4.039 14 N -0.509 5.509 15 C 0.158 3.842 16 O -0.215 6.215 17 C -0.051 4.051 18 C -0.014 4.014 19 H 0.263 0.737 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.299 0.701 25 H 0.069 0.931 26 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -7.174 -4.026 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.032 3.968 10 H 0.023 0.977 11 C -0.141 4.141 12 C -0.067 4.067 13 C -0.158 4.158 14 N -0.237 5.237 15 C -0.067 4.067 16 O -0.102 6.102 17 C -0.104 4.104 18 C -0.052 4.052 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.314 0.686 25 H 0.088 0.912 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.638 -7.660 -3.839 8.592 hybrid contribution -0.132 1.627 -0.328 1.665 sum 0.505 -6.033 -4.166 7.349 Atomic orbital electron populations 1.70097 1.07515 1.27597 1.50598 1.25804 0.95502 1.02689 0.94362 0.85586 0.79016 0.79266 0.78097 1.20163 1.21299 1.18779 1.21476 0.94621 0.91509 1.49448 0.91684 1.18658 0.94144 0.93688 0.90266 0.97660 1.21637 0.97759 0.92737 1.01940 1.20059 0.95255 0.99122 0.92279 1.21770 1.03856 0.88136 1.02000 1.70078 1.11256 1.32138 1.10257 1.29243 1.00676 0.79158 0.97596 1.84304 1.51946 1.27481 1.46445 1.24079 0.95640 0.99949 0.90739 1.20326 0.99110 0.85453 1.00327 0.92839 0.92397 0.90778 0.89051 0.90765 0.68590 0.91249 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 12.27 21.45 0.26 -52.19 15 2 C 0.02 0.86 5.25 84.65 0.44 1.30 15 3 Si 0.95 42.14 29.55 68.60 2.03 44.17 15 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 7 C -0.53 -28.11 8.45 25.60 0.22 -27.90 15 8 H 0.06 3.31 7.77 -2.91 -0.02 3.29 15 9 C 0.05 2.51 1.94 -11.39 -0.02 2.49 15 10 H 0.01 0.29 8.06 -2.39 -0.02 0.27 15 11 C -0.10 -4.11 5.15 30.76 0.16 -3.95 15 12 C -0.03 -1.08 6.30 30.00 0.19 -0.89 15 13 C -0.04 -1.55 6.98 41.46 0.29 -1.26 15 14 N -0.51 -18.48 11.29 -303.49 -3.43 -21.91 15 15 C 0.16 4.71 13.23 130.44 1.73 6.43 15 16 O -0.21 -8.10 10.77 0.74 0.01 -8.10 15 17 C -0.05 -2.18 7.24 24.87 0.18 -2.00 15 18 C -0.01 -0.67 5.31 29.96 0.16 -0.51 15 19 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15 20 H 0.06 2.23 8.12 -2.39 -0.02 2.21 15 21 H 0.07 2.79 8.11 -2.39 -0.02 2.77 15 22 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 23 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.30 4.57 8.06 -2.91 -0.02 4.55 15 25 H 0.07 3.21 8.11 -2.39 -0.02 3.19 15 26 H 0.06 3.24 7.20 -2.39 -0.02 3.22 15 Total: -1.00 -62.78 225.07 3.38 -59.40 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.17 Total: 4.91 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.34 Total: -26.29 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -3.16 Total: -74.10 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.01 Total: -8.10 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -62.78 3.38 -59.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466983.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.542 kcal (2) G-P(sol) polarization free energy of solvation -62.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds