Wall clock time and date at job start Mon Mar 30 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41155 * 126.63673 * 2 1 4 4 C 1.46681 * 126.38407 * 359.97438 * 3 2 1 5 5 O 1.21317 * 119.99953 * 179.97438 * 4 3 2 6 6 C 1.38962 * 107.22847 * 180.02562 * 3 2 1 7 7 N 1.34516 * 108.81281 * 0.26042 * 6 3 2 8 8 C 1.46498 * 125.35886 * 179.71914 * 7 6 3 9 9 C 1.38140 * 109.29150 * 359.57219 * 7 6 3 10 10 C 1.40085 * 126.03643 * 180.17109 * 9 7 6 11 11 H 1.08000 * 120.00271 * 219.12381 * 10 9 7 12 12 C 1.40063 * 119.99620 * 39.12005 * 10 9 7 13 13 N 1.30852 * 119.99800 * 19.56045 * 12 10 9 14 14 Si 1.86799 * 120.00168 * 199.55111 * 12 10 9 15 15 H 1.48500 * 109.47057 * 90.00281 * 14 12 10 16 16 H 1.48497 * 109.47389 * 210.00447 * 14 12 10 17 17 H 1.48507 * 109.46944 * 330.00752 * 14 12 10 18 18 H 1.08996 * 109.47639 * 90.02501 * 1 2 3 19 19 H 1.09000 * 109.47207 * 210.02407 * 1 2 3 20 20 H 1.08999 * 109.47085 * 330.02121 * 1 2 3 21 21 H 1.08004 * 119.99809 * 359.97438 * 4 3 2 22 22 H 1.08004 * 125.59549 * 180.02562 * 6 3 2 23 23 H 1.09001 * 109.46882 * 87.57726 * 8 7 6 24 24 H 1.08996 * 109.46990 * 207.58395 * 8 7 6 25 25 H 1.09004 * 109.46571 * 327.58206 * 8 7 6 26 26 H 0.97006 * 119.99679 * 184.84501 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3493 1.1327 0.0000 4 6 1.9209 2.5356 -0.0005 5 8 2.7487 3.4225 0.0000 6 6 3.6599 0.6709 -0.0006 7 7 3.6460 -0.6742 -0.0067 8 6 4.8318 -1.5343 -0.0151 9 6 2.3375 -1.1170 -0.0005 10 6 1.9200 -2.4542 -0.0007 11 1 1.0633 -2.7524 -0.5868 12 6 2.6137 -3.4045 0.7592 13 7 3.3836 -3.0188 1.7445 14 14 2.4397 -5.2224 0.3664 15 1 3.4779 -5.6174 -0.6191 16 1 2.6100 -6.0161 1.6099 17 1 1.0927 -5.4788 -0.2040 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 0.8687 2.7789 -0.0014 22 1 4.5447 1.2903 -0.0004 23 1 5.1553 -1.7171 1.0096 24 1 4.5894 -2.4827 -0.4945 25 1 5.6332 -1.0427 -0.5669 26 1 3.9183 -3.6697 2.2256 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259530643.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:53 Heat of formation + Delta-G solvation = -7.672566 kcal Electronic energy + Delta-G solvation = -11848.936556 eV Core-core repulsion = 9700.044315 eV Total energy + Delta-G solvation = -2148.892241 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65871 -37.48209 -33.50481 -32.35259 -29.19074 -27.77079 -25.55428 -23.68434 -22.08961 -19.17972 -17.99632 -16.58163 -15.33763 -15.09653 -14.37803 -14.03259 -13.52581 -12.99704 -12.75070 -12.46369 -12.09898 -11.84242 -11.50384 -11.18668 -10.93793 -10.75101 -10.49363 -10.41957 -10.05229 -9.02874 -8.71587 -7.23442 -6.94629 -6.58285 -4.36243 2.43148 2.92975 3.07631 3.11117 3.78791 3.95921 4.30546 4.47026 5.05433 5.44543 5.84069 6.16192 6.27067 6.42003 6.54768 6.60430 6.68872 6.78397 6.98330 7.18412 7.31433 7.47684 7.92644 8.10972 8.49262 8.52838 8.67479 8.95643 9.11982 10.24580 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.055114 B = 0.012140 C = 0.010468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.917622 B = 2305.804774 C = 2674.146373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.251 4.251 3 C -0.260 4.260 4 C 0.410 3.590 5 O -0.518 6.518 6 C -0.010 4.010 7 N -0.426 5.426 8 C 0.097 3.903 9 C 0.230 3.770 10 C -0.473 4.473 11 H 0.088 0.912 12 C 0.076 3.924 13 N -0.822 5.822 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.262 1.262 18 H 0.035 0.965 19 H 0.053 0.947 20 H 0.038 0.962 21 H 0.079 0.921 22 H 0.142 0.858 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 -0.870 -2.170 2.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.255 4.255 3 C -0.269 4.269 4 C 0.275 3.725 5 O -0.397 6.397 6 C -0.144 4.144 7 N -0.102 5.102 8 C -0.045 4.045 9 C 0.121 3.879 10 C -0.508 4.508 11 H 0.106 0.894 12 C -0.138 4.138 13 N -0.451 5.451 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.186 1.186 18 H 0.054 0.946 19 H 0.072 0.928 20 H 0.057 0.943 21 H 0.095 0.905 22 H 0.160 0.840 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.554 -0.696 -1.957 2.149 hybrid contribution 0.138 -1.097 0.014 1.105 sum 0.692 -1.792 -1.943 2.732 Atomic orbital electron populations 1.19705 0.91784 1.00042 0.98972 1.19636 0.93657 0.90986 1.21241 1.19970 0.93392 0.94186 1.19365 1.23065 0.93261 0.87055 0.69111 1.90395 1.58218 1.50934 1.40179 1.21700 0.97270 0.83659 1.11812 1.44037 1.07068 1.04822 1.54226 1.21809 0.85379 0.94670 1.02643 1.17701 0.79807 0.93248 0.97156 1.18468 1.14803 0.90662 1.26876 0.89383 1.25732 0.94551 1.00877 0.92666 1.69908 1.23368 1.37015 1.14855 0.86434 0.79896 0.82654 0.78514 1.19727 1.20601 1.18617 0.94590 0.92825 0.94342 0.90478 0.84032 0.90702 0.90689 0.93299 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 10.03 36.00 0.36 -0.61 15 2 C -0.25 -6.08 6.30 -103.16 -0.65 -6.73 15 3 C -0.26 -6.09 6.12 -105.11 -0.64 -6.74 15 4 C 0.41 8.54 11.45 34.14 0.39 8.93 15 5 O -0.52 -11.91 17.72 5.53 0.10 -11.81 15 6 C -0.01 -0.23 11.17 -16.11 -0.18 -0.41 15 7 N -0.43 -10.25 3.08 -121.11 -0.37 -10.62 15 8 C 0.10 2.02 9.19 59.85 0.55 2.57 15 9 C 0.23 5.91 6.06 -83.97 -0.51 5.40 15 10 C -0.47 -12.04 8.59 -38.21 -0.33 -12.37 15 11 H 0.09 2.19 7.92 -52.49 -0.42 1.78 15 12 C 0.08 1.83 4.01 -17.29 -0.07 1.76 15 13 N -0.82 -20.38 10.70 55.56 0.59 -19.78 15 14 Si 0.90 18.14 29.61 -169.99 -5.03 13.11 15 15 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 18 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.05 1.11 7.96 -51.93 -0.41 0.69 15 20 H 0.04 0.68 7.75 -51.93 -0.40 0.28 15 21 H 0.08 1.34 7.74 -52.48 -0.41 0.94 15 22 H 0.14 3.03 8.06 -52.48 -0.42 2.60 15 23 H 0.07 1.59 7.10 -51.93 -0.37 1.22 15 24 H 0.07 1.58 6.83 -51.93 -0.35 1.22 15 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.28 6.32 8.30 -40.82 -0.34 5.98 15 LS Contribution 233.29 15.07 3.52 3.52 Total: -1.00 -28.46 233.29 -5.04 -33.50 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.76 Total: 0.29 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.08 Total: -8.20 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.22 Total: -30.40 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.10 Total: -11.81 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.46 -5.04 -33.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259530643.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.827 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds