Wall clock time and date at job start Mon Mar 30 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41155 * 126.63673 * 2 1 4 4 C 1.46681 * 126.38407 * 359.97438 * 3 2 1 5 5 O 1.21317 * 119.99953 * 179.97438 * 4 3 2 6 6 C 1.38962 * 107.22847 * 180.02562 * 3 2 1 7 7 N 1.34516 * 108.81281 * 0.26042 * 6 3 2 8 8 C 1.46498 * 125.35886 * 179.71914 * 7 6 3 9 9 C 1.38140 * 109.29150 * 359.57219 * 7 6 3 10 10 C 1.40085 * 126.03643 * 180.17109 * 9 7 6 11 11 H 1.08000 * 120.00271 * 219.12381 * 10 9 7 12 12 C 1.40063 * 119.99620 * 39.12005 * 10 9 7 13 13 N 1.30852 * 119.99800 * 19.56045 * 12 10 9 14 14 Si 1.86799 * 120.00168 * 199.55111 * 12 10 9 15 15 H 1.48500 * 109.47057 * 90.00281 * 14 12 10 16 16 H 1.48497 * 109.47389 * 210.00447 * 14 12 10 17 17 H 1.48507 * 109.46944 * 330.00752 * 14 12 10 18 18 H 1.08996 * 109.47639 * 90.02501 * 1 2 3 19 19 H 1.09000 * 109.47207 * 210.02407 * 1 2 3 20 20 H 1.08999 * 109.47085 * 330.02121 * 1 2 3 21 21 H 1.08004 * 119.99809 * 359.97438 * 4 3 2 22 22 H 1.08004 * 125.59549 * 180.02562 * 6 3 2 23 23 H 1.09001 * 109.46882 * 87.57726 * 8 7 6 24 24 H 1.08996 * 109.46990 * 207.58395 * 8 7 6 25 25 H 1.09004 * 109.46571 * 327.58206 * 8 7 6 26 26 H 0.97006 * 119.99679 * 184.84501 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3493 1.1327 0.0000 4 6 1.9209 2.5356 -0.0005 5 8 2.7487 3.4225 0.0000 6 6 3.6599 0.6709 -0.0006 7 7 3.6460 -0.6742 -0.0067 8 6 4.8318 -1.5343 -0.0151 9 6 2.3375 -1.1170 -0.0005 10 6 1.9200 -2.4542 -0.0007 11 1 1.0633 -2.7524 -0.5868 12 6 2.6137 -3.4045 0.7592 13 7 3.3836 -3.0188 1.7445 14 14 2.4397 -5.2224 0.3664 15 1 3.4779 -5.6174 -0.6191 16 1 2.6100 -6.0161 1.6099 17 1 1.0927 -5.4788 -0.2040 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 0.8687 2.7789 -0.0014 22 1 4.5447 1.2903 -0.0004 23 1 5.1553 -1.7171 1.0096 24 1 4.5894 -2.4827 -0.4945 25 1 5.6332 -1.0427 -0.5669 26 1 3.9183 -3.6697 2.2256 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259530643.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:53 Heat of formation + Delta-G solvation = -23.991986 kcal Electronic energy + Delta-G solvation = -11849.644219 eV Core-core repulsion = 9700.044315 eV Total energy + Delta-G solvation = -2149.599904 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.43564 -39.20658 -35.32810 -34.09364 -30.98027 -29.47037 -27.29983 -25.46774 -23.78058 -20.99816 -19.73115 -18.39148 -17.13654 -16.78956 -16.08008 -15.76729 -15.25423 -14.71795 -14.48069 -14.19239 -13.70913 -13.48498 -13.20421 -12.86423 -12.61795 -12.46344 -12.21267 -12.11096 -11.75903 -10.81483 -10.42538 -9.02432 -8.78341 -8.40597 -6.24272 0.73378 1.31760 1.43550 1.53957 1.99471 2.27694 2.57911 2.72224 3.21378 3.88567 4.26044 4.41720 4.60968 4.78347 4.87551 4.93291 5.00522 5.21186 5.32645 5.37099 5.55521 5.74124 6.09971 6.28290 6.69640 6.78456 6.91574 7.11436 7.29592 8.45683 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.055114 B = 0.012140 C = 0.010468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.917622 B = 2305.804774 C = 2674.146373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.264 4.264 3 C -0.279 4.279 4 C 0.420 3.580 5 O -0.540 6.540 6 C -0.025 4.025 7 N -0.433 5.433 8 C 0.099 3.901 9 C 0.189 3.811 10 C -0.500 4.500 11 H 0.082 0.918 12 C 0.044 3.956 13 N -0.849 5.849 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.262 1.262 18 H 0.051 0.949 19 H 0.042 0.958 20 H 0.064 0.936 21 H 0.127 0.873 22 H 0.157 0.843 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 -0.948 -2.467 2.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.268 4.268 3 C -0.287 4.287 4 C 0.286 3.714 5 O -0.421 6.421 6 C -0.160 4.160 7 N -0.109 5.109 8 C -0.043 4.043 9 C 0.080 3.920 10 C -0.535 4.535 11 H 0.100 0.900 12 C -0.168 4.168 13 N -0.479 5.479 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.186 1.186 18 H 0.070 0.930 19 H 0.061 0.939 20 H 0.083 0.917 21 H 0.143 0.857 22 H 0.175 0.825 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.185 -0.771 -2.258 2.393 hybrid contribution 0.257 -1.006 0.116 1.045 sum 0.441 -1.777 -2.142 2.817 Atomic orbital electron populations 1.19750 0.89536 1.00773 1.00189 1.20228 0.95535 0.90916 1.20123 1.20429 0.93343 0.95592 1.19385 1.23486 0.94896 0.85429 0.67606 1.90392 1.59386 1.51135 1.41152 1.22121 0.98288 0.83770 1.11806 1.44236 1.07432 1.05327 1.53857 1.21861 0.85377 0.94474 1.02573 1.18128 0.80940 0.94088 0.98855 1.18613 1.15615 0.91472 1.27843 0.89974 1.26399 0.93872 1.04584 0.91950 1.69949 1.23979 1.38578 1.15417 0.85402 0.79856 0.77401 0.78318 1.18804 1.20307 1.18623 0.93009 0.93940 0.91721 0.85732 0.82539 0.91495 0.91510 0.89998 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.76 10.03 71.23 0.71 -1.05 15 2 C -0.26 -12.58 6.30 -18.92 -0.12 -12.70 15 3 C -0.28 -12.71 6.12 -20.18 -0.12 -12.83 15 4 C 0.42 16.44 11.45 70.03 0.80 17.25 15 5 O -0.54 -23.79 17.72 -3.14 -0.06 -23.85 15 6 C -0.03 -1.17 11.17 84.46 0.94 -0.23 15 7 N -0.43 -20.81 3.08 -537.08 -1.66 -22.46 15 8 C 0.10 4.07 9.19 127.77 1.17 5.24 15 9 C 0.19 9.78 6.06 38.83 0.24 10.01 15 10 C -0.50 -25.69 8.59 23.16 0.20 -25.49 15 11 H 0.08 4.15 7.92 -2.91 -0.02 4.13 15 12 C 0.04 2.11 4.01 85.28 0.34 2.46 15 13 N -0.85 -42.15 10.70 21.85 0.23 -41.92 15 14 Si 0.97 36.91 29.61 68.60 2.03 38.95 15 15 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 16 H -0.28 -10.39 7.11 99.48 0.71 -9.69 15 17 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15 18 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 19 H 0.04 1.72 7.96 -2.39 -0.02 1.70 15 20 H 0.06 2.13 7.75 -2.39 -0.02 2.11 15 21 H 0.13 3.79 7.74 -2.91 -0.02 3.76 15 22 H 0.16 6.56 8.06 -2.91 -0.02 6.53 15 23 H 0.07 2.84 7.10 -2.39 -0.02 2.82 15 24 H 0.07 2.81 6.83 -2.39 -0.02 2.79 15 25 H 0.08 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.28 12.87 8.30 -92.70 -0.77 12.10 15 Total: -1.00 -59.83 233.29 5.89 -53.94 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.17 Total: 12.69 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.17 Total: -17.34 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -1.42 Total: -64.38 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.95 kcal Total: -59.83 5.89 -53.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259530643.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.943 kcal (2) G-P(sol) polarization free energy of solvation -59.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds