Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41374 * 126.80886 * 2 1 4 4 C 1.35447 * 103.99207 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.78013 * 179.73791 * 4 3 2 6 6 C 1.50695 * 115.55029 * 54.24466 * 5 4 3 7 7 H 1.08001 * 119.99774 * 266.83004 * 6 5 4 8 8 C 1.37868 * 120.00376 * 86.82878 * 6 5 4 9 9 N 1.31519 * 119.99993 * 348.54141 * 8 6 5 10 10 Si 1.86805 * 120.00133 * 168.53943 * 8 6 5 11 11 H 1.48492 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46940 * 120.00014 * 10 8 6 13 13 H 1.48502 * 109.46861 * 239.99982 * 10 8 6 14 14 C 1.53007 * 117.49760 * 268.57067 * 5 4 3 15 15 C 1.53000 * 117.49864 * 199.91248 * 5 4 3 16 16 O 1.34049 * 106.44177 * 359.97438 * 4 3 2 17 17 N 1.20914 * 111.56517 * 0.02562 * 16 4 3 18 18 H 1.08997 * 109.46972 * 89.99462 * 1 2 3 19 19 H 1.08999 * 109.47882 * 210.00288 * 1 2 3 20 20 H 1.08999 * 109.46708 * 330.00773 * 1 2 3 21 21 H 1.08003 * 128.00823 * 359.96061 * 3 2 1 22 22 H 0.96999 * 119.99664 * 174.96865 * 9 8 6 23 23 H 1.09000 * 117.49761 * 0.02562 * 14 5 4 24 24 H 1.08993 * 117.49696 * 145.01886 * 14 5 4 25 25 H 1.08997 * 117.50285 * 214.97888 * 15 5 4 26 26 H 1.09004 * 117.50105 * 0.02562 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 0.0006 5 6 4.9023 1.3693 -0.0047 6 6 5.0623 2.3884 1.0939 7 1 4.7822 3.4170 0.9212 8 6 5.5664 2.0076 2.3193 9 7 5.6958 0.7314 2.6094 10 14 6.0655 3.3045 3.5678 11 1 5.8221 4.6557 3.0021 12 1 5.2629 3.1347 4.8056 13 1 7.5076 3.1538 3.8883 14 6 5.5268 1.6915 -1.3638 15 6 6.1567 0.6242 -0.4653 16 8 3.4537 -0.7256 0.0015 17 7 2.2868 -1.0424 0.0010 18 1 -0.3633 0.0001 -1.0276 19 1 -0.3635 -0.8899 0.5138 20 1 -0.3633 0.8901 0.5137 21 1 2.0712 2.1742 -0.0006 22 1 6.1175 0.4633 3.4408 23 1 4.9973 1.3523 -2.2541 24 1 6.0537 2.6405 -1.4633 25 1 7.0978 0.8714 0.0258 26 1 6.0418 -0.4175 -0.7650 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595611.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = 59.300981 kcal Electronic energy + Delta-G solvation = -11894.586868 eV Core-core repulsion = 9748.598819 eV Total energy + Delta-G solvation = -2145.988050 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.51672 -38.35275 -35.45790 -34.12749 -31.98827 -29.38891 -27.77363 -24.11772 -23.44698 -22.72705 -20.41961 -18.76534 -18.16822 -17.48791 -16.58581 -15.91989 -15.17829 -14.45239 -14.08758 -13.95475 -13.73402 -13.36423 -13.21147 -12.88135 -12.40528 -12.21207 -11.99794 -11.77169 -11.31043 -10.75650 -10.61450 -10.42029 -9.70248 -8.21311 -6.37376 0.81916 1.41840 1.45136 1.54603 1.57020 2.31879 2.48992 3.13365 3.43367 3.54900 3.80204 4.29148 4.44864 4.54300 4.60568 4.73091 4.78554 4.91018 4.97600 5.12350 5.14577 5.40243 5.51838 5.55024 5.67819 6.19098 6.71876 7.34177 7.54571 8.86998 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.039225 B = 0.013186 C = 0.011561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.653247 B = 2122.976768 C = 2421.283328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.014 3.986 3 C -0.268 4.268 4 C 0.051 3.949 5 C 0.061 3.939 6 C -0.506 4.506 7 H 0.071 0.929 8 C 0.027 3.973 9 N -0.899 5.899 10 Si 0.959 3.041 11 H -0.258 1.258 12 H -0.287 1.287 13 H -0.276 1.276 14 C -0.153 4.153 15 C -0.158 4.158 16 O 0.051 5.949 17 N -0.420 5.420 18 H 0.097 0.903 19 H 0.076 0.924 20 H 0.097 0.903 21 H 0.176 0.824 22 H 0.263 0.737 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 2.734 -4.548 7.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.145 4.145 3 C -0.290 4.290 4 C -0.012 4.012 5 C 0.059 3.941 6 C -0.543 4.543 7 H 0.090 0.910 8 C -0.175 4.175 9 N -0.535 5.535 10 Si 0.784 3.216 11 H -0.181 1.181 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.190 4.190 15 C -0.196 4.196 16 O -0.004 6.004 17 N -0.135 5.135 18 H 0.116 0.884 19 H 0.094 0.906 20 H 0.116 0.884 21 H 0.194 0.806 22 H 0.072 0.928 23 H 0.109 0.891 24 H 0.125 0.875 25 H 0.096 0.904 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.196 1.279 -4.385 6.919 hybrid contribution 0.418 0.995 0.988 1.463 sum -4.779 2.274 -3.398 6.289 Atomic orbital electron populations 1.20263 0.83107 1.04411 1.04469 1.24254 1.00570 0.88585 1.01135 1.22396 0.90909 1.01306 1.14368 1.25099 0.99532 0.81536 0.95009 1.17332 0.84941 0.96393 0.95413 1.20659 1.44249 0.93557 0.95790 0.91045 1.25853 0.95106 0.97077 0.99495 1.70220 1.41399 1.16763 1.25081 0.85490 0.77947 0.79863 0.78325 1.18146 1.21344 1.20191 1.23125 1.03269 1.00297 0.92326 1.22557 0.98059 0.95436 1.03516 1.84717 1.21703 1.24906 1.69080 1.73690 0.89900 1.25812 1.24085 0.88425 0.90554 0.88432 0.80622 0.92772 0.89146 0.87515 0.90441 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.47 71.24 0.75 -1.00 15 2 C 0.01 0.55 7.33 43.58 0.32 0.87 15 3 C -0.27 -11.49 10.97 22.40 0.25 -11.25 15 4 C 0.05 2.51 6.55 25.04 0.16 2.67 15 5 C 0.06 2.97 1.82 -53.67 -0.10 2.87 15 6 C -0.51 -26.33 8.75 25.60 0.22 -26.11 15 7 H 0.07 3.59 7.84 -2.91 -0.02 3.57 15 8 C 0.03 1.45 5.34 84.65 0.45 1.90 15 9 N -0.90 -51.24 13.01 21.44 0.28 -50.96 15 10 Si 0.96 41.56 29.56 68.60 2.03 43.59 15 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 12 H -0.29 -12.54 7.11 99.48 0.71 -11.84 15 13 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 14 C -0.15 -6.12 9.94 30.62 0.30 -5.82 15 15 C -0.16 -7.26 9.45 30.62 0.29 -6.97 15 16 O 0.05 2.60 11.13 71.56 0.80 3.40 15 17 N -0.42 -19.47 12.07 -49.56 -0.60 -20.07 15 18 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 19 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 20 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.18 6.67 8.06 -2.91 -0.02 6.65 15 22 H 0.26 14.29 8.32 -92.71 -0.77 13.52 15 23 H 0.09 3.25 8.14 -2.39 -0.02 3.23 15 24 H 0.11 3.92 8.14 -2.39 -0.02 3.90 15 25 H 0.08 3.69 8.14 -2.39 -0.02 3.67 15 26 H 0.07 3.25 8.13 -2.38 -0.02 3.23 15 Total: -1.00 -61.96 238.92 6.32 -55.64 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.17 Total: 11.24 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 2.65 Total: -42.84 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -0.32 Total: -71.03 kcal Atomic # 8 Polarization: 2.60 SS G_CDS: 0.80 Total: 3.40 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -61.96 6.32 -55.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595611.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.941 kcal (2) G-P(sol) polarization free energy of solvation -61.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds