Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48507 * 109.46713 * 239.99764 * 3 2 1 5 5 H 1.48496 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47231 * 119.99858 * 3 2 1 7 7 C 1.37879 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00087 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.33257 * 300.20423 * 9 7 2 11 11 C 1.53437 * 109.40202 * 180.41422 * 9 7 2 12 12 N 1.46525 * 108.13764 * 189.80679 * 11 9 7 13 13 C 1.34126 * 129.34831 * 196.65040 * 12 11 9 14 14 N 1.30872 * 108.51294 * 179.67907 * 13 12 11 15 15 C 1.34493 * 109.33718 * 0.09176 * 14 13 12 16 16 C 1.33664 * 107.79276 * 0.02562 * 15 14 13 17 17 C 1.50676 * 129.42074 * 179.86056 * 16 15 14 18 18 N 1.46938 * 109.40610 * 60.00039 * 9 7 2 19 19 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.72617 * 70.14453 * 11 9 7 21 21 H 1.09001 * 109.72606 * 309.47157 * 11 9 7 22 22 H 1.08005 * 125.74350 * 359.68277 * 13 12 11 23 23 H 1.07999 * 126.10557 * 180.02562 * 15 14 13 24 24 H 1.09000 * 109.77013 * 75.96319 * 17 16 15 25 25 H 1.09005 * 109.77182 * 315.17547 * 17 16 15 26 26 H 1.00900 * 110.99863 * 67.20233 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6220 -2.5527 0.8892 11 6 2.2494 -3.6642 0.0116 12 7 1.5059 -4.9043 -0.2257 13 6 1.8797 -6.1743 -0.0105 14 7 0.8951 -6.9622 -0.3606 15 6 -0.1318 -6.2191 -0.8101 16 6 0.2303 -4.9346 -0.7355 17 6 -0.5440 -3.6987 -1.1142 18 7 0.4072 -2.5757 -1.2000 19 1 -0.4850 0.8400 -0.0004 20 1 2.7470 -3.7130 0.9803 21 1 2.9893 -3.5221 -0.7760 22 1 2.8327 -6.4931 0.3853 23 1 -1.0797 -6.5933 -1.1675 24 1 -1.2959 -3.4873 -0.3538 25 1 -1.0271 -3.8477 -2.0799 26 1 0.9707 -2.6423 -2.0343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259752482.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = 48.990137 kcal Electronic energy + Delta-G solvation = -11991.582896 eV Core-core repulsion = 9877.440486 eV Total energy + Delta-G solvation = -2114.142410 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.16579 -38.08694 -34.46797 -34.06820 -31.45667 -29.35567 -26.84773 -25.35531 -23.05416 -22.22738 -20.31962 -18.89241 -17.63378 -16.69535 -16.40854 -15.71600 -15.52875 -14.94025 -14.60409 -14.37054 -14.06524 -13.40736 -12.97048 -12.84443 -12.66465 -12.44849 -11.98330 -11.20877 -10.94685 -10.56901 -10.40057 -9.28699 -8.92972 -8.02856 -6.25908 1.17113 1.48604 1.49060 1.56072 1.96802 2.18389 2.47445 3.18373 3.75530 3.82064 3.94556 4.08504 4.22324 4.32686 4.56309 4.65771 4.81273 4.88838 5.20561 5.50508 5.71959 5.78721 6.01964 6.34372 6.49928 6.83249 6.99956 7.10529 7.48332 9.01576 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.079684 B = 0.010458 C = 0.009495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.304568 B = 2676.810405 C = 2948.105443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.039 3.961 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.555 4.555 8 H 0.065 0.935 9 C 0.219 3.781 10 H 0.007 0.993 11 C 0.080 3.920 12 N -0.456 5.456 13 C 0.175 3.825 14 N -0.532 5.532 15 C -0.041 4.041 16 C -0.070 4.070 17 C 0.134 3.866 18 N -0.662 5.662 19 H 0.257 0.743 20 H 0.097 0.903 21 H 0.087 0.913 22 H 0.234 0.766 23 H 0.185 0.815 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -5.598 -1.353 6.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.166 4.166 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.594 4.594 8 H 0.083 0.917 9 C 0.111 3.889 10 H 0.024 0.976 11 C -0.043 4.043 12 N -0.138 5.138 13 C -0.107 4.107 14 N -0.252 5.252 15 C -0.188 4.188 16 C -0.188 4.188 17 C 0.003 3.997 18 N -0.290 5.290 19 H 0.066 0.934 20 H 0.115 0.885 21 H 0.105 0.895 22 H 0.250 0.750 23 H 0.202 0.798 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.474 -5.738 -1.032 6.333 hybrid contribution 0.822 0.980 -0.034 1.279 sum 3.296 -4.758 -1.066 5.885 Atomic orbital electron populations 1.70204 1.07314 1.26828 1.46996 1.25668 0.95353 1.02057 0.93485 0.85703 0.78325 0.79180 0.78778 1.19625 1.21577 1.19639 1.21106 0.92822 0.90531 1.54917 0.91696 1.19204 0.88986 0.91149 0.89603 0.97553 1.22992 0.96319 0.81960 1.03062 1.45772 1.13397 1.08403 1.46260 1.25393 1.01741 0.78946 1.04623 1.70487 1.01566 1.34089 1.19082 1.22098 1.00123 0.89002 1.07558 1.22656 0.88759 0.99627 1.07710 1.20748 0.94428 0.82832 1.01659 1.60833 1.22036 1.41354 1.04742 0.93377 0.88522 0.89459 0.74960 0.79782 0.91519 0.88045 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.94 12.77 21.45 0.27 -48.66 15 2 C 0.04 2.04 5.39 84.66 0.46 2.50 15 3 Si 0.95 40.97 29.54 68.60 2.03 43.00 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 7 C -0.55 -27.87 8.75 25.60 0.22 -27.65 15 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 15 9 C 0.22 10.15 2.27 44.31 0.10 10.25 15 10 H 0.01 0.35 8.07 -2.39 -0.02 0.33 15 11 C 0.08 2.97 6.42 86.52 0.56 3.52 15 12 N -0.46 -16.50 3.14 -514.63 -1.61 -18.11 15 13 C 0.17 5.71 12.70 180.44 2.29 8.00 15 14 N -0.53 -19.28 11.27 -201.21 -2.27 -21.55 15 15 C -0.04 -1.43 11.85 83.25 0.99 -0.44 15 16 C -0.07 -2.62 6.67 40.64 0.27 -2.35 15 17 C 0.13 5.13 6.98 85.45 0.60 5.73 15 18 N -0.66 -29.42 5.81 -497.40 -2.89 -32.31 15 19 H 0.26 13.80 8.31 -92.71 -0.77 13.03 15 20 H 0.10 3.26 8.14 -2.38 -0.02 3.24 15 21 H 0.09 3.04 8.12 -2.39 -0.02 3.02 15 22 H 0.23 5.45 8.06 -2.91 -0.02 5.43 15 23 H 0.19 5.38 8.06 -2.91 -0.02 5.36 15 24 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.10 3.32 8.14 -2.38 -0.02 3.30 15 26 H 0.32 13.84 8.79 -89.69 -0.79 13.05 15 Total: -1.00 -59.93 226.43 1.41 -58.52 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.40 Total: 19.54 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.48 Total: -0.43 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -6.50 Total: -120.63 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -59.93 1.41 -58.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752482.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.512 kcal (2) G-P(sol) polarization free energy of solvation -59.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds