Wall clock time and date at job start Mon Mar 30 2020 01:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35457 * 126.77579 * 2 1 4 4 C 1.41383 * 103.98511 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80098 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.54826 * 351.42484 * 5 4 3 7 7 H 1.07998 * 120.00196 * 264.92437 * 6 5 4 8 8 C 1.37884 * 119.99698 * 84.93140 * 6 5 4 9 9 N 1.31514 * 120.00019 * 179.02789 * 8 6 5 10 10 Si 1.86801 * 119.99938 * 359.02440 * 8 6 5 11 11 H 1.48496 * 109.46824 * 90.61361 * 10 8 6 12 12 H 1.48499 * 109.47141 * 210.61201 * 10 8 6 13 13 H 1.48502 * 109.46978 * 330.61136 * 10 8 6 14 14 C 1.53002 * 117.49608 * 205.76305 * 5 4 3 15 15 C 1.52998 * 117.49812 * 137.10014 * 5 4 3 16 16 N 1.30177 * 106.39446 * 0.02562 * 4 3 2 17 17 O 1.20919 * 111.60500 * 0.02562 * 16 4 3 18 18 H 1.08997 * 109.47693 * 89.99515 * 1 2 3 19 19 H 1.08998 * 109.46916 * 209.99658 * 1 2 3 20 20 H 1.09000 * 109.46764 * 329.99038 * 1 2 3 21 21 H 1.07997 * 128.00725 * 0.24275 * 3 2 1 22 22 H 0.96999 * 119.99970 * 179.97438 * 9 8 6 23 23 H 1.08995 * 117.49981 * 359.97438 * 14 5 4 24 24 H 1.08998 * 117.49701 * 145.02169 * 14 5 4 25 25 H 1.09001 * 117.49539 * 214.97252 * 15 5 4 26 26 H 1.08993 * 117.50133 * 359.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 6 4.8011 2.7884 -0.2034 7 1 4.9109 3.2087 -1.1922 8 6 4.5514 3.6136 0.8726 9 7 4.4657 4.9143 0.6979 10 14 4.3347 2.8841 2.5786 11 1 5.6514 2.8256 3.2627 12 1 3.4052 3.7335 3.3658 13 1 3.7753 1.5133 2.4633 14 6 6.1491 0.6031 -0.5889 15 6 6.0334 0.8009 0.9247 16 7 3.4764 -0.7563 0.0003 17 8 2.3095 -1.0736 -0.0008 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5140 21 1 2.0345 2.1271 0.0036 22 1 4.2897 5.4948 1.4548 23 1 6.0170 -0.4072 -0.9759 24 1 6.8704 1.2212 -1.1234 25 1 6.6787 1.5490 1.3851 26 1 5.8250 -0.0789 1.5333 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770951.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:41 Heat of formation + Delta-G solvation = 80.815261 kcal Electronic energy + Delta-G solvation = -12008.201946 eV Core-core repulsion = 9863.146826 eV Total energy + Delta-G solvation = -2145.055120 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.09766 -36.97274 -33.15682 -32.31314 -31.88395 -27.36291 -25.93879 -23.06205 -21.63805 -21.26449 -18.42877 -16.97753 -16.83003 -15.99975 -14.73217 -14.20434 -13.50565 -13.18490 -12.99139 -12.75822 -12.43242 -11.91436 -11.40777 -11.10744 -10.60600 -10.56111 -10.34333 -9.84716 -9.66892 -9.19359 -8.71588 -8.65260 -8.21803 -6.21803 -4.27877 2.16237 3.08577 3.24290 3.33539 3.45192 3.80097 4.35615 4.89118 5.02176 5.10446 5.35638 5.54520 5.61149 5.79389 6.02380 6.03667 6.15117 6.23566 6.42736 6.47097 6.66856 6.76029 7.07584 7.19186 7.60360 8.37878 8.81035 9.11317 9.40783 10.88696 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.034836 B = 0.016872 C = 0.013805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.577218 B = 1659.198049 C = 2027.703046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.073 4.073 3 C -0.196 4.196 4 C 0.084 3.916 5 C 0.059 3.941 6 C -0.485 4.485 7 H 0.083 0.917 8 C 0.086 3.914 9 N -0.890 5.890 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.291 1.291 13 H -0.258 1.258 14 C -0.164 4.164 15 C -0.186 4.186 16 N -0.394 5.394 17 O 0.077 5.923 18 H 0.080 0.920 19 H 0.074 0.926 20 H 0.085 0.915 21 H 0.170 0.830 22 H 0.267 0.733 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -7.415 0.513 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.217 4.217 4 C -0.074 4.074 5 C 0.057 3.943 6 C -0.522 4.522 7 H 0.101 0.899 8 C -0.118 4.118 9 N -0.527 5.527 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.182 1.182 14 C -0.202 4.202 15 C -0.224 4.224 16 N -0.103 5.103 17 O 0.015 5.985 18 H 0.098 0.902 19 H 0.093 0.907 20 H 0.104 0.896 21 H 0.187 0.813 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.047 -8.272 0.603 9.708 hybrid contribution -0.447 0.585 1.010 1.249 sum -5.493 -7.687 1.613 9.585 Atomic orbital electron populations 1.20164 0.84908 1.03743 1.03299 1.24343 0.95922 0.86964 1.06415 1.22450 0.91520 1.00776 1.06925 1.23685 0.97962 0.88036 0.97753 1.17524 0.81520 0.93944 1.01325 1.20141 1.50170 0.85392 0.96541 0.89883 1.24936 0.93534 0.94451 0.98863 1.69881 1.47959 1.03034 1.31796 0.86891 0.78564 0.80155 0.84438 1.20113 1.21704 1.18208 1.22869 1.01807 1.00091 0.95390 1.23046 1.04365 1.02019 0.92988 1.73697 0.96393 1.17363 1.22856 1.84707 1.11588 1.33117 1.69080 0.90166 0.90705 0.89616 0.81271 0.92297 0.90348 0.88857 0.88843 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.45 36.00 0.38 -0.38 15 2 C -0.07 -1.31 7.49 -35.30 -0.26 -1.58 15 3 C -0.20 -4.19 10.07 -39.38 -0.40 -4.59 15 4 C 0.08 1.97 5.55 -82.10 -0.46 1.52 15 5 C 0.06 1.45 1.34 -156.81 -0.21 1.24 15 6 C -0.48 -13.36 8.87 -34.44 -0.31 -13.66 15 7 H 0.08 2.47 8.06 -52.49 -0.42 2.05 15 8 C 0.09 2.40 5.47 -17.82 -0.10 2.30 15 9 N -0.89 -26.10 13.96 55.43 0.77 -25.33 15 10 Si 0.87 21.65 25.06 -169.99 -4.26 17.39 15 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 13 H -0.26 -6.42 6.21 56.52 0.35 -6.07 15 14 C -0.16 -3.57 9.88 -26.69 -0.26 -3.83 15 15 C -0.19 -4.22 7.72 -26.69 -0.21 -4.42 15 16 N -0.39 -8.87 11.97 33.42 0.40 -8.47 15 17 O 0.08 1.54 11.20 17.18 0.19 1.73 15 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.17 3.63 8.03 -52.49 -0.42 3.21 15 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.08 1.62 8.13 -51.93 -0.42 1.20 15 24 H 0.09 1.94 8.14 -51.93 -0.42 1.52 15 25 H 0.09 2.12 7.44 -51.93 -0.39 1.73 15 26 H 0.07 1.64 8.14 -51.93 -0.42 1.22 15 LS Contribution 230.13 15.07 3.47 3.47 Total: -1.00 -30.39 230.13 -4.20 -34.60 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -2.95 Total: 0.03 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.82 Total: -23.41 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 1.17 Total: -33.80 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.19 Total: 1.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.26 Total: 17.39 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.39 -4.20 -34.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770951.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.411 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds